Analysis of interatomic Contacts of Structural Units in PDB entry:
2BPH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BPH entry

There are 2 chains in PDB entry 2BPH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 117LYS 245
B
 GLN 117LYS 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 2BPH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
139 149Right-handed alpha
Helix 2
2
A
159 171Right-handed alpha
Helix 3
3
B
139 150Right-handed alpha
Helix 4
4
B
159 172Right-handed alpha
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There are 4 sheets in PDB entry 2BPH. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
128 138anti-parallel
Strand 3
A
236 244anti-parallel
Strand 4
A
153 154anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
128 138anti-parallel
Strand 3
A
236 244anti-parallel
Strand 4
A
177 184parallel
Strand 5
A
218 223anti-parallel
Strand 6
A
226 230anti-parallel
Strand 7
A
205 207parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 126first strand
Strand 2
B
128 138anti-parallel
Strand 3
B
236 244anti-parallel
Strand 4
B
153 155anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 126first strand
Strand 2
B
128 138anti-parallel
Strand 3
B
236 244anti-parallel
Strand 4
B
177 184parallel
Strand 5
B
218 223anti-parallel
Strand 6
B
226 230anti-parallel
Strand 7
B
205 207parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il