Analysis of interatomic Contacts of Structural Units in PDB entry:
2BPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BPQ entry

There are 2 chains in PDB entry 2BPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 25GLN 369
B
 PRO 25ALA 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 2BPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 36Right-handed alpha
Helix 2
2
A
43 54Right-handed alpha
Helix 3
3
A
58 72Right-handed alpha
Helix 4
4
A
75 90Right-handed alpha
Helix 5
5
A
115 129Right-handed alpha
Helix 6
6
A
139 143Right-handed 310
Helix 7
7
A
147 154Right-handed alpha
Helix 8
8
A
161 173Right-handed alpha
Helix 9
9
A
179 183Right-handed alpha
Helix 10
10
A
188 197Right-handed alpha
Helix 11
11
A
200 204Right-handed 310
Helix 12
12
A
205 209Right-handed 310
Helix 13
13
A
223 237Right-handed alpha
Helix 14
14
A
275 280Right-handed 310
Helix 15
15
A
285 290Right-handed 310
Helix 16
16
A
293 306Right-handed alpha
Helix 17
17
A
310 329Right-handed alpha
Helix 18
18
A
335 353Right-handed alpha
Helix 19
19
A
354 368Right-handed alpha
Helix 20
20
B
26 36Right-handed alpha
Helix 21
21
B
43 54Right-handed alpha
Helix 22
22
B
58 72Right-handed alpha
Helix 23
23
B
75 89Right-handed alpha
Helix 24
24
B
115 129Right-handed alpha
Helix 25
25
B
147 154Right-handed alpha
Helix 26
26
B
161 173Right-handed alpha
Helix 27
27
B
179 183Right-handed alpha
Helix 28
28
B
191 197Right-handed alpha
Helix 29
29
B
200 205Right-handed 310
Helix 30
30
B
205 209Right-handed 310
Helix 31
31
B
223 237Right-handed alpha
Helix 32
32
B
275 280Right-handed 310
Helix 33
33
B
285 289Right-handed 310
Helix 34
34
B
293 306Right-handed alpha
Helix 35
35
B
310 332Right-handed alpha
Helix 36
36
B
335 353Right-handed alpha
Helix 37
37
B
354 369Right-handed alpha
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There are 4 sheets in PDB entry 2BPQ. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
216 220parallel
Strand 3
A
240 246parallel
Strand 4
A
259 265anti-parallel
Strand 5
A
268 274anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
174 178parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 107first strand
Strand 2
B
216 220parallel
Strand 3
B
240 246parallel
Strand 4
B
259 265anti-parallel
Strand 5
B
268 274anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 137first strand
Strand 2
B
174 178parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il