Analysis of interatomic Contacts of Structural Units in PDB entry:
2BQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BQP entry

There are 2 chains in PDB entry 2BQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1SER 234
B
 THR 1SER 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2BQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
98 100Right-handed 310
Helix 2
2
A
111 113Right-handed 310
Helix 3
3
A
199 201Right-handed 310
Helix 4
4
B
98 100Right-handed 310
Helix 5
5
B
111 113Right-handed 310
Helix 6
6
B
199 202Right-handed alpha
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There are 6 sheets in PDB entry 2BQP. Click on sheet of interest to get list of strands forming it: 1A, 2A, 3A, 1B, 2B, 3B,

There are 7 strands in 1A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
39 52anti-parallel
Strand 3
A
205 216anti-parallel
Strand 4
A
82 88anti-parallel
Strand 5
A
115 121anti-parallel
Strand 6
A
135 142anti-parallel
Strand 7
A
148 152anti-parallel
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There are 3 strands in 2A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 27first strand
Strand 2
A
30 34anti-parallel
Strand 3
A
218 224anti-parallel
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There are 6 strands in 3A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
226 233anti-parallel
Strand 3
A
62 73anti-parallel
Strand 4
A
160 167anti-parallel
Strand 5
A
172 179anti-parallel
Strand 6
A
189 197anti-parallel
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There are 7 strands in 1B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 21first strand
Strand 2
B
39 52anti-parallel
Strand 3
B
205 216anti-parallel
Strand 4
B
82 88anti-parallel
Strand 5
B
115 121anti-parallel
Strand 6
B
135 142anti-parallel
Strand 7
B
148 152anti-parallel
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There are 3 strands in 2B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 27first strand
Strand 2
B
30 34anti-parallel
Strand 3
B
218 224anti-parallel
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There are 6 strands in 3B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 8first strand
Strand 2
B
226 233anti-parallel
Strand 3
B
62 73anti-parallel
Strand 4
B
160 167anti-parallel
Strand 5
B
172 179anti-parallel
Strand 6
B
189 197anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il