Analysis of interatomic Contacts of Structural Units in PDB entry:
2BUF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2BUF entry

There are 12 chains in PDB entry 2BUF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	HIS 301
B	THR 2	ARG 300
C	THR 2	ARG 300
D	THR 2	ARG 300
E	THR 2	LYS 299
F	THR 2	LYS 299
G	THR 2	LYS 299
H	THR 2	ASN 297
I	THR 2	ARG 298
J	THR 2	ARG 298
K	THR 2	ARG 298
L	THR 2	ARG 300

There are146 helices in PDB entry 2BUF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	4	26	Right-handed alpha
Helix 2	2	A	42	58	Right-handed alpha
Helix 3	3	A	69	79	Right-handed alpha
Helix 4	4	A	93	107	Right-handed alpha
Helix 5	5	A	107	119	Right-handed alpha
Helix 6	6	A	129	132	Right-handed 310
Helix 7	7	A	166	176	Right-handed alpha
Helix 8	8	A	197	210	Right-handed alpha
Helix 9	9	A	235	245	Right-handed alpha
Helix 10	10	A	251	265	Right-handed alpha
Helix 11	11	A	279	286	Right-handed alpha
Helix 12	12	B	4	24	Right-handed alpha
Helix 13	13	B	35	39	Right-handed 310
Helix 14	14	B	41	58	Right-handed alpha
Helix 15	15	B	69	79	Right-handed alpha
Helix 16	16	B	93	107	Right-handed alpha
Helix 17	17	B	107	119	Right-handed alpha
Helix 18	18	B	129	132	Right-handed 310
Helix 19	19	B	166	176	Right-handed alpha
Helix 20	20	B	197	210	Right-handed alpha
Helix 21	21	B	235	245	Right-handed alpha
Helix 22	22	B	249	251	Right-handed 310
Helix 23	23	B	252	265	Right-handed alpha
Helix 24	24	B	279	287	Right-handed alpha
Helix 25	25	C	4	18	Right-handed alpha
Helix 26	26	C	18	24	Right-handed alpha
Helix 27	27	C	37	40	Right-handed 310
Helix 28	28	C	41	58	Right-handed alpha
Helix 29	29	C	70	79	Right-handed alpha
Helix 30	30	C	93	107	Right-handed alpha
Helix 31	31	C	107	119	Right-handed alpha
Helix 32	32	C	129	132	Right-handed 310
Helix 33	33	C	166	176	Right-handed alpha
Helix 34	34	C	197	209	Right-handed alpha
Helix 35	35	C	235	245	Right-handed alpha
Helix 36	36	C	251	265	Right-handed alpha
Helix 37	37	C	279	284	Right-handed alpha
Helix 38	38	D	7	26	Right-handed alpha
Helix 39	39	D	42	58	Right-handed alpha
Helix 40	40	D	68	79	Right-handed alpha
Helix 41	41	D	93	107	Right-handed alpha
Helix 42	42	D	107	119	Right-handed alpha
Helix 43	43	D	129	132	Right-handed 310
Helix 44	44	D	166	176	Right-handed alpha
Helix 45	45	D	197	210	Right-handed alpha
Helix 46	46	D	235	245	Right-handed alpha
Helix 47	47	D	251	264	Right-handed alpha
Helix 48	48	D	279	287	Right-handed alpha
Helix 49	49	E	5	24	Right-handed alpha
Helix 50	50	E	35	39	Right-handed 310
Helix 51	51	E	41	58	Right-handed alpha
Helix 52	52	E	69	79	Right-handed alpha
Helix 53	53	E	93	107	Right-handed alpha
Helix 54	54	E	107	119	Right-handed alpha
Helix 55	55	E	129	132	Right-handed 310
Helix 56	56	E	166	175	Right-handed alpha
Helix 57	57	E	197	208	Right-handed alpha
Helix 58	58	E	235	245	Right-handed alpha
Helix 59	59	E	251	265	Right-handed alpha
Helix 60	60	E	279	286	Right-handed alpha
Helix 61	61	F	5	25	Right-handed alpha
Helix 62	62	F	37	40	Right-handed 310
Helix 63	63	F	41	58	Right-handed alpha
Helix 64	64	F	69	79	Right-handed alpha
Helix 65	65	F	93	107	Right-handed alpha
Helix 66	66	F	107	119	Right-handed alpha
Helix 67	67	F	129	132	Right-handed 310
Helix 68	68	F	166	176	Right-handed alpha
Helix 69	69	F	197	210	Right-handed alpha
Helix 70	70	F	235	245	Right-handed alpha
Helix 71	71	F	249	251	Right-handed 310
Helix 72	72	F	252	265	Right-handed alpha
Helix 73	73	F	279	287	Right-handed alpha
Helix 74	74	G	4	18	Right-handed alpha
Helix 75	75	G	18	24	Right-handed alpha
Helix 76	76	G	41	57	Right-handed alpha
Helix 77	77	G	69	80	Right-handed alpha
Helix 78	78	G	93	106	Right-handed alpha
Helix 79	79	G	107	119	Right-handed alpha
Helix 80	80	G	129	132	Right-handed 310
Helix 81	81	G	166	175	Right-handed alpha
Helix 82	82	G	197	210	Right-handed alpha
Helix 83	83	G	235	245	Right-handed alpha
Helix 84	84	G	251	264	Right-handed alpha
Helix 85	85	G	279	286	Right-handed alpha
Helix 86	86	H	7	17	Right-handed alpha
Helix 87	87	H	18	23	Right-handed alpha
Helix 88	88	H	24	26	Right-handed 310
Helix 89	89	H	41	58	Right-handed alpha
Helix 90	90	H	69	79	Right-handed alpha
Helix 91	91	H	93	107	Right-handed alpha
Helix 92	92	H	107	119	Right-handed alpha
Helix 93	93	H	129	132	Right-handed 310
Helix 94	94	H	166	176	Right-handed alpha
Helix 95	95	H	197	210	Right-handed alpha
Helix 96	96	H	235	245	Right-handed alpha
Helix 97	97	H	251	265	Right-handed alpha
Helix 98	98	H	279	284	Right-handed alpha
Helix 99	99	I	4	24	Right-handed alpha
Helix 100	100	I	42	58	Right-handed alpha
Helix 101	101	I	68	80	Right-handed alpha
Helix 102	102	I	93	107	Right-handed alpha
Helix 103	103	I	107	119	Right-handed alpha
Helix 104	104	I	129	132	Right-handed 310
Helix 105	105	I	166	176	Right-handed alpha
Helix 106	106	I	197	209	Right-handed alpha
Helix 107	107	I	235	245	Right-handed alpha
Helix 108	108	I	249	251	Right-handed 310
Helix 109	109	I	252	265	Right-handed alpha
Helix 110	110	I	279	287	Right-handed alpha
Helix 111	111	J	7	17	Right-handed alpha
Helix 112	112	J	18	23	Right-handed alpha
Helix 113	113	J	37	40	Right-handed 310
Helix 114	114	J	41	58	Right-handed alpha
Helix 115	115	J	72	80	Right-handed alpha
Helix 116	116	J	93	107	Right-handed alpha
Helix 117	117	J	107	119	Right-handed alpha
Helix 118	118	J	129	132	Right-handed 310
Helix 119	119	J	166	177	Right-handed alpha
Helix 120	120	J	197	209	Right-handed alpha
Helix 121	121	J	235	246	Right-handed alpha
Helix 122	122	J	251	264	Right-handed alpha
Helix 123	123	J	279	284	Right-handed alpha
Helix 124	124	K	7	16	Right-handed alpha
Helix 125	125	K	18	25	Right-handed alpha
Helix 126	126	K	43	58	Right-handed alpha
Helix 127	127	K	68	79	Right-handed alpha
Helix 128	128	K	93	107	Right-handed alpha
Helix 129	129	K	107	119	Right-handed alpha
Helix 130	130	K	129	132	Right-handed 310
Helix 131	131	K	166	176	Right-handed alpha
Helix 132	132	K	197	210	Right-handed alpha
Helix 133	133	K	235	245	Right-handed alpha
Helix 134	134	K	251	265	Right-handed alpha
Helix 135	135	K	279	287	Right-handed alpha
Helix 136	136	L	5	23	Right-handed alpha
Helix 137	137	L	42	58	Right-handed alpha
Helix 138	138	L	69	80	Right-handed alpha
Helix 139	139	L	93	107	Right-handed alpha
Helix 140	140	L	107	119	Right-handed alpha
Helix 141	141	L	129	132	Right-handed 310
Helix 142	142	L	166	176	Right-handed alpha
Helix 143	143	L	197	210	Right-handed alpha
Helix 144	144	L	235	245	Right-handed alpha
Helix 145	145	L	251	265	Right-handed alpha
Helix 146	146	L	279	286	Right-handed alpha

There are 47 sheets in PDB entry 2BUF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, BD, CA, CB, CC, CD, CE, A, DB, C, DD, DE, EA, EB, EC, ED, FA, FB, FC, FD, GA, GB, GC, GD, HA, HB, HC, HD, IA, IB, IC, ID, JA, JB, JC, KA, KB, KC, LA, LB, LC, LD,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	128	first strand
Strand 2	A	179	187	parallel
Strand 3	A	61	66	parallel
Strand 4	A	29	34	parallel
Strand 5	A	213	218	parallel
Strand 6	A	269	274	parallel
Strand 7	A	293	296	anti-parallel
Strand 8	A	233	234	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	128	first strand
Strand 2	A	179	187	parallel
Strand 3	A	193	195	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	138	first strand
Strand 2	A	160	165	anti-parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	126	first strand
Strand 2	B	179	182	parallel
Strand 3	B	61	66	parallel
Strand 4	B	29	34	parallel
Strand 5	B	213	218	parallel
Strand 6	B	269	274	parallel
Strand 7	B	293	296	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	89	90	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	138	first strand
Strand 2	B	160	165	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	187	first strand
Strand 2	B	193	195	anti-parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	126	first strand
Strand 2	C	179	182	parallel
Strand 3	C	61	66	parallel
Strand 4	C	29	34	parallel
Strand 5	C	213	218	parallel
Strand 6	C	269	274	parallel
Strand 7	C	293	295	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	C	89	90	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	138	first strand
Strand 2	C	160	165	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	153	154	anti-parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	187	first strand
Strand 2	C	193	195	anti-parallel

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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	126	first strand
Strand 2	D	179	182	parallel
Strand 3	D	61	66	parallel
Strand 4	D	29	34	parallel
Strand 5	D	213	218	parallel
Strand 6	D	269	274	parallel
Strand 7	D	293	295	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	86	first strand
Strand 2	D	89	90	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	138	first strand
Strand 2	D	160	165	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	143	first strand
Strand 2	D	152	153	anti-parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	187	first strand
Strand 2	D	193	195	anti-parallel

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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	126	first strand
Strand 2	E	179	182	parallel
Strand 3	E	61	65	parallel
Strand 4	E	29	33	parallel
Strand 5	E	213	218	parallel
Strand 6	E	269	274	parallel
Strand 7	E	293	295	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	86	first strand
Strand 2	E	89	91	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	138	first strand
Strand 2	E	160	165	anti-parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	185	187	first strand
Strand 2	E	193	195	anti-parallel

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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	123	126	first strand
Strand 2	F	179	182	parallel
Strand 3	F	61	65	parallel
Strand 4	F	29	33	parallel
Strand 5	F	213	218	parallel
Strand 6	F	269	274	parallel
Strand 7	F	293	295	anti-parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	137	first strand
Strand 2	F	161	165	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	141	142	first strand
Strand 2	F	153	154	anti-parallel

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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	185	187	first strand
Strand 2	F	193	195	anti-parallel

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There are 7 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	126	first strand
Strand 2	G	179	182	parallel
Strand 3	G	61	65	parallel
Strand 4	G	29	34	parallel
Strand 5	G	213	218	parallel
Strand 6	G	269	274	parallel
Strand 7	G	293	296	anti-parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	134	138	first strand
Strand 2	G	160	165	anti-parallel

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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	185	187	first strand
Strand 2	G	193	195	anti-parallel

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There are 2 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	223	224	first strand
Strand 2	G	230	231	anti-parallel

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There are 7 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	126	first strand
Strand 2	H	179	182	parallel
Strand 3	H	61	65	parallel
Strand 4	H	29	33	parallel
Strand 5	H	213	218	parallel
Strand 6	H	270	274	parallel
Strand 7	H	294	295	anti-parallel

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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	160	165	anti-parallel

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There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	141	143	first strand
Strand 2	H	152	154	anti-parallel

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There are 2 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	185	187	first strand
Strand 2	H	193	195	anti-parallel

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There are 7 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	123	127	first strand
Strand 2	I	179	183	parallel
Strand 3	I	61	65	parallel
Strand 4	I	29	33	parallel
Strand 5	I	213	218	parallel
Strand 6	I	269	274	parallel
Strand 7	I	293	295	anti-parallel

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There are 2 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	85	86	first strand
Strand 2	I	89	90	anti-parallel

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There are 2 strands in IC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	134	138	first strand
Strand 2	I	160	165	anti-parallel

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There are 2 strands in ID sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	185	187	first strand
Strand 2	I	193	195	anti-parallel

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There are 6 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	123	126	first strand
Strand 2	J	179	182	parallel
Strand 3	J	61	66	parallel
Strand 4	J	29	34	parallel
Strand 5	J	213	218	parallel
Strand 6	J	269	274	parallel

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There are 2 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	134	137	first strand
Strand 2	J	161	165	anti-parallel

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There are 2 strands in JC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	185	187	first strand
Strand 2	J	193	195	anti-parallel

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There are 7 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	123	127	first strand
Strand 2	K	179	183	parallel
Strand 3	K	61	65	parallel
Strand 4	K	29	33	parallel
Strand 5	K	213	218	parallel
Strand 6	K	269	274	parallel
Strand 7	K	293	295	anti-parallel

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There are 2 strands in KB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	134	137	first strand
Strand 2	K	161	165	anti-parallel

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There are 2 strands in KC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	185	187	first strand
Strand 2	K	193	195	anti-parallel

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There are 7 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	123	126	first strand
Strand 2	L	179	182	parallel
Strand 3	L	61	66	parallel
Strand 4	L	29	34	parallel
Strand 5	L	213	218	parallel
Strand 6	L	269	274	parallel
Strand 7	L	293	296	anti-parallel

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There are 2 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	85	86	first strand
Strand 2	L	89	90	anti-parallel

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There are 2 strands in LC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	134	138	first strand
Strand 2	L	160	165	anti-parallel

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There are 2 strands in LD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	185	187	first strand
Strand 2	L	193	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2BUF

Analysis of interatomic Contacts of Structural Units in PDB entry:
2BUF