Analysis of interatomic Contacts of Structural Units in PDB entry:
2BUJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BUJ entry

There are 2 chains in PDB entry 2BUJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5GLY 299
B
 GLU 4ALA 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 2BUJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 71Right-handed alpha
Helix 2
2
A
105 115Right-handed alpha
Helix 3
3
A
121 142Right-handed alpha
Helix 4
4
A
150 152Right-handed 310
Helix 5
5
A
179 194Right-handed alpha
Helix 6
6
A
195 199Right-handed 310
Helix 7
7
A
200 204Right-handed 310
Helix 8
8
A
214 231Right-handed alpha
Helix 9
9
A
235 241Right-handed alpha
Helix 10
10
A
244 251Right-handed alpha
Helix 11
11
A
262 273Right-handed alpha
Helix 12
12
A
276 280Right-handed 310
Helix 13
13
A
282 293Right-handed alpha
Helix 14
14
B
55 71Right-handed alpha
Helix 15
15
B
105 115Right-handed alpha
Helix 16
16
B
121 142Right-handed alpha
Helix 17
17
B
150 152Right-handed 310
Helix 18
18
B
179 194Right-handed alpha
Helix 19
19
B
195 199Right-handed 310
Helix 20
20
B
200 204Right-handed 310
Helix 21
21
B
214 231Right-handed alpha
Helix 22
22
B
235 241Right-handed alpha
Helix 23
23
B
244 251Right-handed alpha
Helix 24
24
B
262 273Right-handed alpha
Helix 25
25
B
276 280Right-handed 310
Helix 26
26
B
282 294Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 2BUJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC,

There are 12 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 88first strand
Strand 2
A
91 99anti-parallel
Strand 3
A
45 53anti-parallel
Strand 4
A
32 39anti-parallel
Strand 5
A
18 27anti-parallel
Strand 6
A
8 15anti-parallel
Strand 7
B
8 15anti-parallel
Strand 8
B
18 28anti-parallel
Strand 9
B
32 39anti-parallel
Strand 10
B
45 52anti-parallel
Strand 11
B
93 99anti-parallel
Strand 12
B
82 86anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
171 172anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
162 164anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
209 212anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
171 172anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 156first strand
Strand 2
B
162 164anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 178first strand
Strand 2
B
209 212anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il