Analysis of interatomic Contacts of Structural Units in PDB entry:
2BVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BVF entry

There are 2 chains in PDB entry 2BVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5GLU 457
B
 LYS 5GLU 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2BVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 29Right-handed alpha
Helix 2
2
A
47 62Right-handed alpha
Helix 3
3
A
110 120Right-handed alpha
Helix 4
4
A
134 140Right-handed alpha
Helix 5
5
A
147 152Right-handed alpha
Helix 6
6
A
153 156Right-handed 310
Helix 7
7
A
178 189Right-handed alpha
Helix 8
8
A
190 192Right-handed 310
Helix 9
9
A
219 237Right-handed alpha
Helix 10
10
A
266 279Right-handed alpha
Helix 11
11
A
292 304Right-handed alpha
Helix 12
12
A
322 332Right-handed alpha
Helix 13
13
A
333 337Right-handed 310
Helix 14
14
A
386 402Right-handed alpha
Helix 15
15
A
411 415Right-handed 310
Helix 16
16
A
419 428Right-handed alpha
Helix 17
17
A
428 443Right-handed alpha
Helix 18
18
B
23 29Right-handed alpha
Helix 19
19
B
47 62Right-handed alpha
Helix 20
20
B
110 120Right-handed alpha
Helix 21
21
B
134 140Right-handed alpha
Helix 22
22
B
147 152Right-handed alpha
Helix 23
23
B
153 156Right-handed 310
Helix 24
24
B
178 189Right-handed alpha
Helix 25
25
B
190 193Right-handed 310
Helix 26
26
B
219 237Right-handed alpha
Helix 27
27
B
266 279Right-handed alpha
Helix 28
28
B
292 299Right-handed alpha
Helix 29
29
B
322 332Right-handed alpha
Helix 30
30
B
333 337Right-handed 310
Helix 31
31
B
386 402Right-handed alpha
Helix 32
32
B
411 415Right-handed 310
Helix 33
33
B
419 428Right-handed alpha
Helix 34
34
B
428 443Right-handed alpha
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There are 10 sheets in PDB entry 2BVF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
41 44anti-parallel
Strand 3
A
84 87parallel
Strand 4
A
65 68parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
102 106anti-parallel
Strand 3
A
194 201anti-parallel
Strand 4
A
158 164anti-parallel
Strand 5
A
170 174anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
203 204anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
209 216anti-parallel
Strand 3
A
289 291anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
209 216anti-parallel
Strand 3
A
255 262anti-parallel
Strand 4
A
244 249anti-parallel
Strand 5
A
345 352anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
41 44anti-parallel
Strand 3
B
84 87parallel
Strand 4
B
65 68parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
102 106anti-parallel
Strand 3
B
194 201anti-parallel
Strand 4
B
158 164anti-parallel
Strand 5
B
170 174anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
203 204anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 286first strand
Strand 2
B
209 216anti-parallel
Strand 3
B
289 291anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 286first strand
Strand 2
B
209 216anti-parallel
Strand 3
B
255 262anti-parallel
Strand 4
B
244 249anti-parallel
Strand 5
B
345 352anti-parallel
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