Analysis of interatomic Contacts of Structural Units in PDB entry:
2BVG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2BVG entry

There are 4 chains in PDB entry 2BVG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 5	GLU 457
B	LYS 5	GLU 457
C	LYS 5	GLU 457
D	LYS 5	GLU 457

There are 68 helices in PDB entry 2BVG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	29	Right-handed alpha
Helix 2	2	A	47	61	Right-handed alpha
Helix 3	3	A	110	121	Right-handed alpha
Helix 4	4	A	134	140	Right-handed alpha
Helix 5	5	A	147	152	Right-handed alpha
Helix 6	6	A	153	156	Right-handed 310
Helix 7	7	A	178	189	Right-handed alpha
Helix 8	8	A	190	193	Right-handed 310
Helix 9	9	A	219	236	Right-handed alpha
Helix 10	10	A	266	280	Right-handed alpha
Helix 11	11	A	292	303	Right-handed alpha
Helix 12	12	A	322	333	Right-handed alpha
Helix 13	13	A	334	337	Right-handed 310
Helix 14	14	A	386	402	Right-handed alpha
Helix 15	15	A	411	415	Right-handed 310
Helix 16	16	A	419	428	Right-handed alpha
Helix 17	17	A	428	443	Right-handed alpha
Helix 18	18	B	23	29	Right-handed alpha
Helix 19	19	B	47	61	Right-handed alpha
Helix 20	20	B	110	121	Right-handed alpha
Helix 21	21	B	134	140	Right-handed alpha
Helix 22	22	B	147	152	Right-handed alpha
Helix 23	23	B	153	156	Right-handed 310
Helix 24	24	B	178	189	Right-handed alpha
Helix 25	25	B	190	193	Right-handed 310
Helix 26	26	B	219	236	Right-handed alpha
Helix 27	27	B	266	280	Right-handed alpha
Helix 28	28	B	292	303	Right-handed alpha
Helix 29	29	B	322	333	Right-handed alpha
Helix 30	30	B	334	337	Right-handed 310
Helix 31	31	B	386	402	Right-handed alpha
Helix 32	32	B	411	415	Right-handed 310
Helix 33	33	B	419	428	Right-handed alpha
Helix 34	34	B	428	443	Right-handed alpha
Helix 35	35	C	23	29	Right-handed alpha
Helix 36	36	C	47	61	Right-handed alpha
Helix 37	37	C	110	121	Right-handed alpha
Helix 38	38	C	134	140	Right-handed alpha
Helix 39	39	C	147	152	Right-handed alpha
Helix 40	40	C	153	156	Right-handed 310
Helix 41	41	C	178	189	Right-handed alpha
Helix 42	42	C	190	193	Right-handed 310
Helix 43	43	C	219	236	Right-handed alpha
Helix 44	44	C	266	280	Right-handed alpha
Helix 45	45	C	292	303	Right-handed alpha
Helix 46	46	C	322	333	Right-handed alpha
Helix 47	47	C	334	337	Right-handed 310
Helix 48	48	C	386	402	Right-handed alpha
Helix 49	49	C	411	415	Right-handed 310
Helix 50	50	C	419	428	Right-handed alpha
Helix 51	51	C	428	443	Right-handed alpha
Helix 52	52	D	23	29	Right-handed alpha
Helix 53	53	D	47	61	Right-handed alpha
Helix 54	54	D	110	121	Right-handed alpha
Helix 55	55	D	134	140	Right-handed alpha
Helix 56	56	D	147	152	Right-handed alpha
Helix 57	57	D	153	156	Right-handed 310
Helix 58	58	D	178	189	Right-handed alpha
Helix 59	59	D	190	193	Right-handed 310
Helix 60	60	D	219	236	Right-handed alpha
Helix 61	61	D	266	280	Right-handed alpha
Helix 62	62	D	292	303	Right-handed alpha
Helix 63	63	D	322	333	Right-handed alpha
Helix 64	64	D	334	337	Right-handed 310
Helix 65	65	D	386	402	Right-handed alpha
Helix 66	66	D	411	415	Right-handed 310
Helix 67	67	D	419	428	Right-handed alpha
Helix 68	68	D	428	443	Right-handed alpha

There are 20 sheets in PDB entry 2BVG. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD, DE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	42	44	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	84	87	parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	102	106	anti-parallel
Strand 3	A	194	201	anti-parallel
Strand 4	A	158	164	anti-parallel
Strand 5	A	170	174	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	A	203	204	anti-parallel

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There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	291	first strand
Strand 2	A	209	216	anti-parallel
Strand 3	A	255	262	anti-parallel
Strand 4	A	244	249	anti-parallel
Strand 5	A	349	352	anti-parallel
Strand 6	A	371	378	anti-parallel
Strand 7	A	311	318	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	42	44	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	84	87	parallel

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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	97	first strand
Strand 2	B	102	106	anti-parallel
Strand 3	B	194	201	anti-parallel
Strand 4	B	158	164	anti-parallel
Strand 5	B	170	174	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	203	204	anti-parallel

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There are 7 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	291	first strand
Strand 2	B	209	216	anti-parallel
Strand 3	B	255	262	anti-parallel
Strand 4	B	244	249	anti-parallel
Strand 5	B	349	352	anti-parallel
Strand 6	B	371	378	anti-parallel
Strand 7	B	311	318	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	17	first strand
Strand 2	C	42	44	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	84	87	parallel

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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	97	first strand
Strand 2	C	102	106	anti-parallel
Strand 3	C	194	201	anti-parallel
Strand 4	C	158	164	anti-parallel
Strand 5	C	170	174	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	124	first strand
Strand 2	C	203	204	anti-parallel

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There are 7 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	291	first strand
Strand 2	C	209	216	anti-parallel
Strand 3	C	255	262	anti-parallel
Strand 4	C	244	249	anti-parallel
Strand 5	C	349	352	anti-parallel
Strand 6	C	371	378	anti-parallel
Strand 7	C	311	318	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	17	first strand
Strand 2	D	42	44	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	68	first strand
Strand 2	D	84	87	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	97	first strand
Strand 2	D	102	106	anti-parallel
Strand 3	D	194	201	anti-parallel
Strand 4	D	158	164	anti-parallel
Strand 5	D	170	174	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	D	203	204	anti-parallel

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There are 7 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	289	291	first strand
Strand 2	D	209	216	anti-parallel
Strand 3	D	255	262	anti-parallel
Strand 4	D	244	249	anti-parallel
Strand 5	D	349	352	anti-parallel
Strand 6	D	371	378	anti-parallel
Strand 7	D	311	318	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2BVG

Analysis of interatomic Contacts of Structural Units in PDB entry:
2BVG