Analysis of interatomic Contacts of Structural Units in PDB entry:
2BVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BVM entry

There is 1 chain in PDB entry 2BVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 542
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2BVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 11Right-handed alpha
Helix 2
2
A
21 35Right-handed alpha
Helix 3
3
A
41 63Right-handed alpha
Helix 4
4
A
68 90Right-handed alpha
Helix 5
5
A
108 122Right-handed alpha
Helix 6
6
A
137 158Right-handed alpha
Helix 7
7
A
167 197Right-handed alpha
Helix 8
8
A
201 215Right-handed alpha
Helix 9
9
A
217 234Right-handed alpha
Helix 10
10
A
243 248Right-handed alpha
Helix 11
11
A
251 261Right-handed alpha
Helix 12
12
A
264 281Right-handed alpha
Helix 13
13
A
308 324Right-handed alpha
Helix 14
14
A
334 338Right-handed 310
Helix 15
15
A
339 350Right-handed alpha
Helix 16
16
A
355 359Right-handed 310
Helix 17
17
A
393 419Right-handed alpha
Helix 18
18
A
423 439Right-handed alpha
Helix 19
19
A
443 451Right-handed alpha
Helix 20
20
A
452 456Right-handed 310
Helix 21
21
A
464 469Right-handed alpha
Helix 22
22
A
470 483Right-handed alpha
Helix 23
23
A
494 500Right-handed alpha
Helix 24
24
A
504 506Right-handed 310
Helix 25
25
A
513 517Right-handed 310
Helix 26
26
A
523 541Right-handed alpha
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There are 3 sheets in PDB entry 2BVM. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
367 368anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
126 131parallel
Strand 3
A
97 101parallel
Strand 4
A
282 285parallel
Strand 5
A
381 389anti-parallel
Strand 6
A
373 378anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
508 509anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il