Analysis of interatomic Contacts of Structural Units in PDB entry:
2BYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BYJ entry

There are 3 chains in PDB entry 2BYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 36PHE 439
B
 GLY 36PHE 439
C
 GLY 36PHE 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 2BYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 50Right-handed alpha
Helix 2
2
A
83 86Right-handed alpha
Helix 3
3
A
95 105Right-handed alpha
Helix 4
4
A
120 131Right-handed alpha
Helix 5
5
A
142 159Right-handed alpha
Helix 6
6
A
184 187Right-handed 310
Helix 7
7
A
191 194Right-handed alpha
Helix 8
8
A
212 220Right-handed alpha
Helix 9
9
A
245 256Right-handed alpha
Helix 10
10
A
277 281Right-handed 310
Helix 11
11
A
308 313Right-handed alpha
Helix 12
12
A
327 342Right-handed alpha
Helix 13
13
A
345 362Right-handed alpha
Helix 14
14
A
390 399Right-handed alpha
Helix 15
15
A
422 438Right-handed alpha
Helix 16
16
B
40 50Right-handed alpha
Helix 17
17
B
83 86Right-handed alpha
Helix 18
18
B
95 105Right-handed alpha
Helix 19
19
B
120 131Right-handed alpha
Helix 20
20
B
142 159Right-handed alpha
Helix 21
21
B
182 187Right-handed alpha
Helix 22
22
B
191 194Right-handed alpha
Helix 23
23
B
212 220Right-handed alpha
Helix 24
24
B
245 256Right-handed alpha
Helix 25
25
B
277 281Right-handed 310
Helix 26
26
B
308 313Right-handed alpha
Helix 27
27
B
327 342Right-handed alpha
Helix 28
28
B
345 362Right-handed alpha
Helix 29
29
B
390 399Right-handed alpha
Helix 30
30
B
422 438Right-handed alpha
Helix 31
31
C
40 50Right-handed alpha
Helix 32
32
C
83 86Right-handed alpha
Helix 33
33
C
95 105Right-handed alpha
Helix 34
34
C
120 131Right-handed alpha
Helix 35
35
C
142 159Right-handed alpha
Helix 36
36
C
182 187Right-handed alpha
Helix 37
37
C
191 194Right-handed alpha
Helix 38
38
C
212 220Right-handed alpha
Helix 39
39
C
245 256Right-handed alpha
Helix 40
40
C
277 281Right-handed 310
Helix 41
41
C
308 313Right-handed alpha
Helix 42
42
C
327 342Right-handed alpha
Helix 43
43
C
345 362Right-handed alpha
Helix 44
44
C
390 399Right-handed alpha
Helix 45
45
C
422 437Right-handed alpha
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There are 9 sheets in PDB entry 2BYJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
69 72anti-parallel
Strand 3
A
62 66anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
302 306anti-parallel
Strand 3
A
287 290anti-parallel
Strand 4
A
259 263parallel
Strand 5
A
224 230parallel
Strand 6
A
169 173parallel
Strand 7
A
204 207parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 414first strand
Strand 2
A
377 382anti-parallel
Strand 3
A
368 374anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
69 72anti-parallel
Strand 3
B
58 66anti-parallel
Strand 4
A
115 117parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 139first strand
Strand 2
B
302 306anti-parallel
Strand 3
B
287 290anti-parallel
Strand 4
B
259 263parallel
Strand 5
B
224 229parallel
Strand 6
B
169 173parallel
Strand 7
B
204 207parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
411 414first strand
Strand 2
B
377 382anti-parallel
Strand 3
B
368 374anti-parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 79first strand
Strand 2
C
69 72anti-parallel
Strand 3
C
62 66anti-parallel
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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 139first strand
Strand 2
C
302 306anti-parallel
Strand 3
C
287 290anti-parallel
Strand 4
C
259 263parallel
Strand 5
C
224 230parallel
Strand 6
C
169 173parallel
Strand 7
C
204 207parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
411 414first strand
Strand 2
C
377 382anti-parallel
Strand 3
C
368 374anti-parallel
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