Analysis of interatomic Contacts of Structural Units in PDB entry:
2BYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2BYV entry

There is 1 chain in PDB entry 2BYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 TRP 15ARG 991
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 2BYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
E
15 21Right-handed alpha
Helix 2
2
E
27 41Right-handed alpha
Helix 3
3
E
42 45Right-handed 310
Helix 4
4
E
48 59Right-handed alpha
Helix 5
5
E
97 101Right-handed 310
Helix 6
6
E
114 120Right-handed 310
Helix 7
7
E
140 155Right-handed alpha
Helix 8
8
E
182 200Right-handed alpha
Helix 9
9
E
201 204Right-handed 310
Helix 10
10
E
220 230Right-handed alpha
Helix 11
11
E
236 250Right-handed alpha
Helix 12
12
E
273 275Right-handed 310
Helix 13
13
E
283 315Right-handed alpha
Helix 14
14
E
317 321Right-handed 310
Helix 15
15
E
322 334Right-handed alpha
Helix 16
16
E
335 340Right-handed 310
Helix 17
17
E
343 351Right-handed alpha
Helix 18
18
E
405 409Right-handed 310
Helix 19
19
E
432 444Right-handed alpha
Helix 20
20
E
486 498Right-handed alpha
Helix 21
21
E
501 503Right-handed 310
Helix 22
22
E
504 523Right-handed alpha
Helix 23
23
E
524 537Right-handed alpha
Helix 24
24
E
544 571Right-handed alpha
Helix 25
25
E
577 594Right-handed alpha
Helix 26
26
E
606 611Right-handed alpha
Helix 27
27
E
673 682Right-handed alpha
Helix 28
28
E
683 685Right-handed 310
Helix 29
29
E
736 741Right-handed 310
Helix 30
30
E
748 753Right-handed 310
Helix 31
31
E
754 771Right-handed alpha
Helix 32
32
E
774 784Right-handed alpha
Helix 33
33
E
785 788Right-handed 310
Helix 34
34
E
792 816Right-handed alpha
Helix 35
35
E
818 839Right-handed alpha
Helix 36
36
E
841 854Right-handed alpha
Helix 37
37
E
854 859Right-handed alpha
Helix 38
38
E
860 867Right-handed alpha
Helix 39
39
E
868 882Right-handed alpha
Helix 40
40
E
884 897Right-handed alpha
Helix 41
41
E
905 919Right-handed alpha
Helix 42
42
E
930 947Right-handed alpha
Helix 43
43
E
962 971Right-handed alpha
Helix 44
44
E
977 989Right-handed alpha
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There are 7 sheets in PDB entry 2BYV. Click on sheet of interest to get list of strands forming it: EA, EB, EC, ED, EE, EF, EG,

There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
60 64first strand
Strand 2
E
133 139anti-parallel
Strand 3
E
79 85anti-parallel
Strand 4
E
112 113anti-parallel
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There are 8 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
69 71first strand
Strand 2
E
126 129anti-parallel
Strand 3
E
88 92anti-parallel
Strand 4
E
102 107anti-parallel
Strand 5
E
402 403anti-parallel
Strand 6
E
375 381anti-parallel
Strand 7
E
425 431anti-parallel
Strand 8
E
355 359anti-parallel
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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
205 209first strand
Strand 2
E
212 219anti-parallel
Strand 3
E
268 271anti-parallel
Strand 4
E
253 255anti-parallel
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There are 4 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
365 367first strand
Strand 2
E
417 420anti-parallel
Strand 3
E
384 388anti-parallel
Strand 4
E
392 397anti-parallel
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There are 4 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
446 450first strand
Strand 2
E
455 461anti-parallel
Strand 3
E
480 485anti-parallel
Strand 4
E
928 929anti-parallel
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There are 2 strands in EF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
651 655first strand
Strand 2
E
665 669anti-parallel
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There are 3 strands in EG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
702 704first strand
Strand 2
E
694 696anti-parallel
Strand 3
E
721 723anti-parallel
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