Analysis of interatomic Contacts of Structural Units in PDB entry:
2C0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2C0C entry

There are 2 chains in PDB entry 2C0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 10HIS 362
B
 GLN 21HIS 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2C0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 21Right-handed alpha
Helix 2
2
A
35 39Right-handed alpha
Helix 3
3
A
68 74Right-handed alpha
Helix 4
4
A
101 105Right-handed 310
Helix 5
5
A
129 131Right-handed 310
Helix 6
6
A
138 143Right-handed alpha
Helix 7
7
A
146 159Right-handed alpha
Helix 8
8
A
176 187Right-handed alpha
Helix 9
9
A
197 207Right-handed alpha
Helix 10
10
A
219 228Right-handed alpha
Helix 11
11
A
241 250Right-handed alpha
Helix 12
12
A
262 266Right-handed 310
Helix 13
13
A
279 288Right-handed alpha
Helix 14
14
A
295 299Right-handed 310
Helix 15
15
A
299 301Right-handed 310
Helix 16
16
A
302 316Right-handed alpha
Helix 17
17
A
338 349Right-handed alpha
Helix 18
18
B
35 39Right-handed alpha
Helix 19
19
B
68 74Right-handed alpha
Helix 20
20
B
129 131Right-handed 310
Helix 21
21
B
138 143Right-handed alpha
Helix 22
22
B
146 159Right-handed alpha
Helix 23
23
B
176 187Right-handed alpha
Helix 24
24
B
197 207Right-handed alpha
Helix 25
25
B
219 228Right-handed alpha
Helix 26
26
B
240 250Right-handed alpha
Helix 27
27
B
262 266Right-handed 310
Helix 28
28
B
279 288Right-handed alpha
Helix 29
29
B
295 299Right-handed 310
Helix 30
30
B
299 301Right-handed 310
Helix 31
31
B
302 316Right-handed alpha
Helix 32
32
B
338 349Right-handed alpha
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There are 7 sheets in PDB entry 2C0C. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 47first strand
Strand 2
A
23 29anti-parallel
Strand 3
A
85 86anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
55 64anti-parallel
Strand 3
A
90 98anti-parallel
Strand 4
A
111 115anti-parallel
Strand 5
A
132 133anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
55 64anti-parallel
Strand 3
A
355 359anti-parallel
Strand 4
A
323 324parallel
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There are 12 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 214first strand
Strand 2
A
190 195parallel
Strand 3
A
166 169parallel
Strand 4
A
232 237parallel
Strand 5
A
251 259parallel
Strand 6
A
290 293parallel
Strand 7
B
290 293anti-parallel
Strand 8
B
251 259parallel
Strand 9
B
232 237parallel
Strand 10
B
166 169parallel
Strand 11
B
190 195parallel
Strand 12
B
211 214parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 47first strand
Strand 2
B
23 29anti-parallel
Strand 3
B
85 86anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 127first strand
Strand 2
B
55 64anti-parallel
Strand 3
B
90 98anti-parallel
Strand 4
B
111 115anti-parallel
Strand 5
B
132 133anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 127first strand
Strand 2
B
55 64anti-parallel
Strand 3
B
355 359anti-parallel
Strand 4
B
323 324parallel
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