Analysis of interatomic Contacts of Structural Units in PDB entry:
2C0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2C0D entry

There are 2 chains in PDB entry 2C0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 21PRO 188
B
 LEU 21GLN 195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 2C0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 49Right-handed 310
Helix 2
2
A
67 77Right-handed alpha
Helix 3
3
A
77 84Right-handed alpha
Helix 4
4
A
95 105Right-handed alpha
Helix 5
5
A
106 110Right-handed 310
Helix 6
6
A
125 131Right-handed alpha
Helix 7
7
A
166 184Right-handed alpha
Helix 8
8
B
46 49Right-handed 310
Helix 9
9
B
67 77Right-handed alpha
Helix 10
10
B
77 84Right-handed alpha
Helix 11
11
B
95 105Right-handed alpha
Helix 12
12
B
106 110Right-handed 310
Helix 13
13
B
125 131Right-handed alpha
Helix 14
14
B
166 184Right-handed alpha
Helix 15
15
B
189 193Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 2C0D. Click on sheet of interest to get list of strands forming it: AA, AB, BA,

There are 14 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
30 34anti-parallel
Strand 3
A
118 121anti-parallel
Strand 4
A
86 92parallel
Strand 5
A
53 58parallel
Strand 6
A
142 147anti-parallel
Strand 7
A
153 159anti-parallel
Strand 8
B
153 159anti-parallel
Strand 9
B
142 147anti-parallel
Strand 10
B
53 58anti-parallel
Strand 11
B
86 92parallel
Strand 12
B
118 121parallel
Strand 13
B
30 34anti-parallel
Strand 14
B
40 44anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
139 140anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
139 140anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il