Analysis of interatomic Contacts of Structural Units in PDB entry:
2C0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2C0J entry

There are 2 chains in PDB entry 2C0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 15LEU 175
B
 ALA 2SER 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2C0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 34Right-handed alpha
Helix 2
2
A
36 64Right-handed alpha
Helix 3
3
A
70 81Right-handed alpha
Helix 4
4
A
81 88Right-handed alpha
Helix 5
5
A
128 141Right-handed alpha
Helix 6
6
A
153 157Right-handed 310
Helix 7
7
B
3 18Right-handed alpha
Helix 8
8
B
31 52Right-handed alpha
Helix 9
9
B
53 58Right-handed 310
Helix 10
10
B
61 71Right-handed alpha
Helix 11
11
B
71 79Right-handed alpha
Helix 12
12
B
100 104Right-handed 310
Helix 13
13
B
109 113Right-handed 310
Helix 14
14
B
115 119Right-handed 310
Helix 15
15
B
120 134Right-handed alpha
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There are 2 sheets in PDB entry 2C0J. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
102 107anti-parallel
Strand 3
A
161 170anti-parallel
Strand 4
A
144 152anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 87first strand
Strand 2
B
92 97anti-parallel
Strand 3
B
150 155anti-parallel
Strand 4
B
139 144anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il