Analysis of interatomic Contacts of Structural Units in PDB entry:
2C0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2C0Y entry

There is 1 chain in PDB entry 2C0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3ILE 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2C0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 8Right-handed 310
Helix 2
2
A
9 21Right-handed alpha
Helix 3
3
A
28 53Right-handed alpha
Helix 4
4
A
63 68Right-handed 310
Helix 5
5
A
69 77Right-handed alpha
Helix 6
6
A
84 88Right-handed 310
Helix 7
7
A
123 142Right-handed alpha
Helix 8
8
A
148 156Right-handed alpha
Helix 9
9
A
157 161Right-handed 310
Helix 10
10
A
163 167Right-handed 310
Helix 11
11
A
169 181Right-handed alpha
Helix 12
12
A
201 203Right-handed 310
Helix 13
13
A
219 230Right-handed alpha
Helix 14
14
A
241 246Right-handed alpha
Helix 15
15
A
303 307Right-handed 310
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There are 4 sheets in PDB entry 2C0Y. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
247 252anti-parallel
Strand 3
A
294 298parallel
Strand 4
A
276 282anti-parallel
Strand 5
A
263 273anti-parallel
Strand 6
A
104 105anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
247 252anti-parallel
Strand 3
A
294 298parallel
Strand 4
A
276 282anti-parallel
Strand 5
A
263 273anti-parallel
Strand 6
A
233 237anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
205 207anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 214first strand
Strand 2
A
312 315anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il