Analysis of interatomic Contacts of Structural Units in PDB entry:
2C10

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2C10 entry

There are 8 chains in PDB entry 2C10 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 41	ASN 470
A	ASP 472	HIS 762
B	PRO 39	ASN 470
B	ASP 472	HIS 762
C	CYS 41	ASN 470
C	ASP 472	HIS 762
D	PRO 39	ASN 470
D	ASP 472	HIS 762

There are 74 helices in PDB entry 2C10. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	64	79	Right-handed alpha
Helix 2	2	A	85	89	Right-handed 310
Helix 3	3	A	105	116	Right-handed alpha
Helix 4	4	A	155	161	Right-handed alpha
Helix 5	5	A	167	169	Right-handed 310
Helix 6	6	A	172	186	Right-handed alpha
Helix 7	7	A	187	190	Right-handed 310
Helix 8	8	A	191	200	Right-handed alpha
Helix 9	9	A	237	240	Right-handed 310
Helix 10	10	A	255	259	Right-handed 310
Helix 11	11	A	273	283	Right-handed alpha
Helix 12	12	A	376	381	Right-handed alpha
Helix 13	13	A	387	389	Right-handed 310
Helix 14	14	A	572	576	Right-handed 310
Helix 15	15	A	621	628	Right-handed 310
Helix 16	16	A	659	664	Right-handed 310
Helix 17	17	A	687	691	Right-handed 310
Helix 18	18	A	714	719	Right-handed 310
Helix 19	19	A	741	746	Right-handed alpha
Helix 20	20	B	64	79	Right-handed alpha
Helix 21	21	B	85	89	Right-handed 310
Helix 22	22	B	105	116	Right-handed alpha
Helix 23	23	B	155	161	Right-handed alpha
Helix 24	24	B	167	169	Right-handed 310
Helix 25	25	B	172	187	Right-handed alpha
Helix 26	26	B	188	190	Right-handed 310
Helix 27	27	B	191	200	Right-handed alpha
Helix 28	28	B	237	240	Right-handed 310
Helix 29	29	B	255	259	Right-handed 310
Helix 30	30	B	273	283	Right-handed alpha
Helix 31	31	B	376	381	Right-handed alpha
Helix 32	32	B	387	389	Right-handed 310
Helix 33	33	B	572	574	Right-handed 310
Helix 34	34	B	621	628	Right-handed 310
Helix 35	35	B	659	664	Right-handed 310
Helix 36	36	B	687	691	Right-handed 310
Helix 37	37	B	714	719	Right-handed 310
Helix 38	38	C	64	79	Right-handed alpha
Helix 39	39	C	85	89	Right-handed 310
Helix 40	40	C	105	115	Right-handed alpha
Helix 41	41	C	155	161	Right-handed alpha
Helix 42	42	C	167	169	Right-handed 310
Helix 43	43	C	172	186	Right-handed alpha
Helix 44	44	C	187	190	Right-handed 310
Helix 45	45	C	191	199	Right-handed alpha
Helix 46	46	C	237	240	Right-handed 310
Helix 47	47	C	255	259	Right-handed 310
Helix 48	48	C	273	283	Right-handed alpha
Helix 49	49	C	376	381	Right-handed alpha
Helix 50	50	C	387	389	Right-handed 310
Helix 51	51	C	572	576	Right-handed 310
Helix 52	52	C	621	628	Right-handed 310
Helix 53	53	C	659	664	Right-handed 310
Helix 54	54	C	687	691	Right-handed 310
Helix 55	55	C	714	719	Right-handed 310
Helix 56	56	C	741	746	Right-handed alpha
Helix 57	57	D	64	79	Right-handed alpha
Helix 58	58	D	85	89	Right-handed 310
Helix 59	59	D	105	116	Right-handed alpha
Helix 60	60	D	155	161	Right-handed alpha
Helix 61	61	D	167	169	Right-handed 310
Helix 62	62	D	172	186	Right-handed alpha
Helix 63	63	D	187	190	Right-handed 310
Helix 64	64	D	191	199	Right-handed alpha
Helix 65	65	D	237	240	Right-handed 310
Helix 66	66	D	255	259	Right-handed 310
Helix 67	67	D	273	284	Right-handed alpha
Helix 68	68	D	376	381	Right-handed alpha
Helix 69	69	D	387	389	Right-handed 310
Helix 70	70	D	572	574	Right-handed 310
Helix 71	71	D	621	628	Right-handed 310
Helix 72	72	D	659	664	Right-handed 310
Helix 73	73	D	687	691	Right-handed 310
Helix 74	74	D	714	719	Right-handed 310

There are 17 sheets in PDB entry 2C10. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, CA, CB, CC, CD, CE, DA, DB, C,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	137	144	anti-parallel
Strand 3	A	123	130	anti-parallel
Strand 4	A	94	102	anti-parallel
Strand 5	A	409	417	anti-parallel
Strand 6	A	423	445	anti-parallel
Strand 7	A	451	468	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	137	144	anti-parallel
Strand 3	A	164	165	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	211	first strand
Strand 2	A	224	231	anti-parallel
Strand 3	A	242	250	anti-parallel
Strand 4	A	260	266	anti-parallel
Strand 5	A	269	271	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	316	first strand
Strand 2	B	314	316	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	499	first strand
Strand 2	A	515	518	anti-parallel
Strand 3	A	508	512	anti-parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	154	first strand
Strand 2	B	137	146	anti-parallel
Strand 3	B	122	130	anti-parallel
Strand 4	B	94	102	anti-parallel
Strand 5	B	409	417	anti-parallel
Strand 6	B	423	445	anti-parallel
Strand 7	B	451	468	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	154	first strand
Strand 2	B	137	146	anti-parallel
Strand 3	B	164	165	anti-parallel

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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	224	231	anti-parallel
Strand 3	B	242	250	anti-parallel
Strand 4	B	260	266	anti-parallel
Strand 5	B	269	271	anti-parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	499	first strand
Strand 2	B	515	518	anti-parallel
Strand 3	B	508	512	anti-parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	137	144	anti-parallel
Strand 3	C	123	130	anti-parallel
Strand 4	C	94	102	anti-parallel
Strand 5	C	409	417	anti-parallel
Strand 6	C	423	445	anti-parallel
Strand 7	C	451	468	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	137	144	anti-parallel
Strand 3	C	164	165	anti-parallel

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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	211	first strand
Strand 2	C	224	231	anti-parallel
Strand 3	C	242	250	anti-parallel
Strand 4	C	260	266	anti-parallel
Strand 5	C	269	271	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	316	first strand
Strand 2	D	314	316	anti-parallel

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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	497	499	first strand
Strand 2	C	515	518	anti-parallel
Strand 3	C	508	512	anti-parallel

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There are 18 strands in DA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	154	first strand
Strand 2	D	137	144	anti-parallel
Strand 3	D	164	165	anti-parallel
Strand 4	D	137	144	anti-parallel
Strand 5	D	323	326	first strand
Strand 6	D	329	332	anti-parallel
Strand 7	D	335	342	anti-parallel
Strand 8	D	346	354	anti-parallel
Strand 9	D	357	372	parallel
Strand 10	D	383	385	parallel
Strand 11	D	357	372	anti-parallel
Strand 12	D	554	569	first strand
Strand 13	D	536	551	anti-parallel
Strand 14	D	576	578	first strand
Strand 15	D	630	636	anti-parallel
Strand 16	D	672	684	anti-parallel
Strand 17	D	723	726	first strand
Strand 18	D	451	468	anti-parallel

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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	211	first strand
Strand 2	D	224	231	anti-parallel
Strand 3	D	242	250	anti-parallel
Strand 4	D	260	266	anti-parallel
Strand 5	D	269	271	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	497	499	first strand
Strand 2	D	515	518	anti-parallel
Strand 3	D	508	512	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2C10

Analysis of interatomic Contacts of Structural Units in PDB entry:
2C10