Analysis of interatomic Contacts of Structural Units in PDB entry:
2C5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2C5S entry

There is 1 chain in PDB entry 2C5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 3GLU 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 2C5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 35Right-handed alpha
Helix 2
2
A
58 67Right-handed alpha
Helix 3
3
A
84 98Right-handed alpha
Helix 4
4
A
120 134Right-handed alpha
Helix 5
5
A
188 200Right-handed alpha
Helix 6
6
A
216 231Right-handed alpha
Helix 7
7
A
232 234Right-handed 310
Helix 8
8
A
244 255Right-handed alpha
Helix 9
9
A
256 258Right-handed 310
Helix 10
10
A
259 279Right-handed alpha
Helix 11
11
A
297 305Right-handed alpha
Helix 12
12
A
306 308Right-handed 310
Helix 13
13
A
320 331Right-handed alpha
Helix 14
14
A
333 338Right-handed alpha
Helix 15
15
A
358 367Right-handed alpha
Helix 16
16
A
371 382Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2C5S. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
50 53anti-parallel
Strand 3
A
5 10anti-parallel
Strand 4
A
72 82anti-parallel
Strand 5
A
158 167anti-parallel
Strand 6
A
148 154anti-parallel
Strand 7
A
105 112parallel
Strand 8
A
140 141parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 313first strand
Strand 2
A
283 285parallel
Strand 3
A
179 183parallel
Strand 4
A
203 210parallel
Strand 5
A
237 243parallel
Strand 6
A
383 387anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il