Analysis of interatomic Contacts of Structural Units in PDB entry:
2C8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2C8J entry

There are 2 chains in PDB entry 2C8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 311
B
 LYS 2MET 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 2C8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 19Right-handed 310
Helix 2
2
A
20 29Right-handed alpha
Helix 3
3
A
35 49Right-handed alpha
Helix 4
4
A
52 74Right-handed alpha
Helix 5
5
A
91 102Right-handed alpha
Helix 6
6
A
117 124Right-handed alpha
Helix 7
7
A
124 136Right-handed alpha
Helix 8
8
A
149 166Right-handed alpha
Helix 9
9
A
168 174Right-handed alpha
Helix 10
10
A
186 192Right-handed alpha
Helix 11
11
A
194 211Right-handed alpha
Helix 12
12
A
233 245Right-handed alpha
Helix 13
13
A
261 266Right-handed alpha
Helix 14
14
A
270 280Right-handed alpha
Helix 15
15
A
292 309Right-handed alpha
Helix 16
16
B
17 19Right-handed 310
Helix 17
17
B
20 29Right-handed alpha
Helix 18
18
B
35 49Right-handed alpha
Helix 19
19
B
54 56Right-handed 310
Helix 20
20
B
57 74Right-handed alpha
Helix 21
21
B
91 103Right-handed alpha
Helix 22
22
B
117 124Right-handed alpha
Helix 23
23
B
124 136Right-handed alpha
Helix 24
24
B
149 165Right-handed alpha
Helix 25
25
B
168 173Right-handed alpha
Helix 26
26
B
186 192Right-handed alpha
Helix 27
27
B
194 210Right-handed alpha
Helix 28
28
B
233 244Right-handed alpha
Helix 29
29
B
261 266Right-handed alpha
Helix 30
30
B
270 280Right-handed alpha
Helix 31
31
B
292 311Right-handed alpha
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There are 4 sheets in PDB entry 2C8J. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 85first strand
Strand 2
A
3 11parallel
Strand 3
A
106 111parallel
Strand 4
A
139 142parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 220first strand
Strand 2
A
175 182parallel
Strand 3
A
249 253parallel
Strand 4
A
282 284parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 85first strand
Strand 2
B
4 11parallel
Strand 3
B
106 111parallel
Strand 4
B
139 142parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 220first strand
Strand 2
B
175 182parallel
Strand 3
B
249 253parallel
Strand 4
B
282 284parallel
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