Analysis of interatomic Contacts of Structural Units in PDB entry:
2C8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2C8K entry

There is 1 chain in PDB entry 2C8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 994
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 2C8K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
8 17Right-handed alpha
Helix 3
3
A
25 37Right-handed alpha
Helix 4
4
A
48 57Right-handed alpha
Helix 5
5
A
59 76Right-handed alpha
Helix 6
6
A
80 85Right-handed alpha
Helix 7
7
A
88 111Right-handed alpha
Helix 8
8
A
114 120Right-handed alpha
Helix 9
9
A
121 123Right-handed 310
Helix 10
10
A
143 145Right-handed 310
Helix 11
11
A
200 204Right-handed 310
Helix 12
12
A
226 229Right-handed 310
Helix 13
13
A
230 242Right-handed alpha
Helix 14
14
A
247 275Right-handed alpha
Helix 15
15
A
276 280Right-handed 310
Helix 16
16
A
291 307Right-handed alpha
Helix 17
17
A
310 329Right-handed alpha
Helix 18
18
A
337 344Right-handed alpha
Helix 19
19
A
403 406Right-handed 310
Helix 20
20
A
407 420Right-handed alpha
Helix 21
21
A
439 452Right-handed alpha
Helix 22
22
A
463 468Right-handed alpha
Helix 23
23
A
469 477Right-handed alpha
Helix 24
24
A
517 524Right-handed alpha
Helix 25
25
A
538 555Right-handed alpha
Helix 26
26
A
572 576Right-handed 310
Helix 27
27
A
580 582Right-handed 310
Helix 28
28
A
583 588Right-handed alpha
Helix 29
29
A
606 618Right-handed alpha
Helix 30
30
A
628 639Right-handed alpha
Helix 31
31
A
654 661Right-handed alpha
Helix 32
32
A
662 673Right-handed alpha
Helix 33
33
A
682 694Right-handed alpha
Helix 34
34
A
704 706Right-handed 310
Helix 35
35
A
707 714Right-handed alpha
Helix 36
36
A
724 731Right-handed alpha
Helix 37
37
A
739 781Right-handed alpha
Helix 38
38
A
788 798Right-handed alpha
Helix 39
39
A
800 808Right-handed alpha
Helix 40
40
A
830 857Right-handed alpha
Helix 41
41
A
868 873Right-handed 310
Helix 42
42
A
889 893Right-handed 310
Helix 43
43
A
894 914Right-handed alpha
Helix 44
44
A
926 929Right-handed 310
Helix 45
45
A
930 950Right-handed alpha
Helix 46
46
A
951 957Right-handed alpha
Helix 47
47
A
965 975Right-handed alpha
Helix 48
48
A
975 987Right-handed alpha
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There are 8 sheets in PDB entry 2C8K. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
150 154anti-parallel
Strand 4
A
218 225anti-parallel
Strand 5
A
162 168anti-parallel
Strand 6
A
207 208anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
173 176anti-parallel
Strand 3
A
213 216anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 333first strand
Strand 2
A
733 735anti-parallel
Strand 3
A
716 720parallel
Strand 4
A
698 701parallel
Strand 5
A
347 351parallel
Strand 6
A
620 624parallel
Strand 7
A
675 676parallel
Strand 8
A
652 653parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 367first strand
Strand 2
A
591 599anti-parallel
Strand 3
A
525 530parallel
Strand 4
A
533 536anti-parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 367first strand
Strand 2
A
591 599anti-parallel
Strand 3
A
560 567anti-parallel
Strand 4
A
511 516anti-parallel
Strand 5
A
493 500anti-parallel
Strand 6
A
479 488anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 373first strand
Strand 2
A
376 378anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 384first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
400 401anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 427first strand
Strand 2
A
434 436anti-parallel
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