Analysis of interatomic Contacts of Structural Units in PDB entry:
2C8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2C8M entry

There are 4 chains in PDB entry 2C8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 256
B
 MET 1LEU 257
C
 MET 1LEU 257
D
 MET 1GLY 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 2C8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 28Right-handed alpha
Helix 2
2
A
52 57Right-handed alpha
Helix 3
3
A
58 65Right-handed alpha
Helix 4
4
A
98 117Right-handed alpha
Helix 5
5
A
169 177Right-handed alpha
Helix 6
6
A
198 202Right-handed 310
Helix 7
7
A
206 223Right-handed alpha
Helix 8
8
A
232 246Right-handed alpha
Helix 9
9
A
249 255Right-handed alpha
Helix 10
10
B
13 28Right-handed alpha
Helix 11
11
B
52 57Right-handed alpha
Helix 12
12
B
58 65Right-handed alpha
Helix 13
13
B
98 117Right-handed alpha
Helix 14
14
B
169 177Right-handed alpha
Helix 15
15
B
192 195Right-handed 310
Helix 16
16
B
198 202Right-handed 310
Helix 17
17
B
206 223Right-handed alpha
Helix 18
18
B
232 246Right-handed alpha
Helix 19
19
B
249 255Right-handed alpha
Helix 20
20
C
13 28Right-handed alpha
Helix 21
21
C
52 57Right-handed alpha
Helix 22
22
C
58 66Right-handed alpha
Helix 23
23
C
98 117Right-handed alpha
Helix 24
24
C
169 177Right-handed alpha
Helix 25
25
C
191 196Right-handed alpha
Helix 26
26
C
198 202Right-handed 310
Helix 27
27
C
206 223Right-handed alpha
Helix 28
28
C
232 246Right-handed alpha
Helix 29
29
C
249 255Right-handed alpha
Helix 30
30
D
13 27Right-handed alpha
Helix 31
31
D
52 57Right-handed alpha
Helix 32
32
D
58 65Right-handed alpha
Helix 33
33
D
98 118Right-handed alpha
Helix 34
34
D
169 177Right-handed alpha
Helix 35
35
D
198 202Right-handed 310
Helix 36
36
D
206 223Right-handed alpha
Helix 37
37
D
232 246Right-handed alpha
Helix 38
38
D
249 255Right-handed alpha
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There are 8 sheets in PDB entry 2C8M. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
139 141anti-parallel
Strand 3
A
144 154anti-parallel
Strand 4
A
157 165anti-parallel
Strand 5
A
85 93anti-parallel
Strand 6
A
35 39anti-parallel
Strand 7
A
2 6parallel
Strand 8
A
225 228parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
44 47parallel
Strand 3
A
79 81anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 123first strand
Strand 2
B
139 141anti-parallel
Strand 3
B
144 154anti-parallel
Strand 4
B
156 165anti-parallel
Strand 5
B
85 94anti-parallel
Strand 6
B
35 39anti-parallel
Strand 7
B
2 6parallel
Strand 8
B
225 229parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 71first strand
Strand 2
B
44 47parallel
Strand 3
B
79 81anti-parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 123first strand
Strand 2
C
139 141anti-parallel
Strand 3
C
144 154anti-parallel
Strand 4
C
157 165anti-parallel
Strand 5
C
85 93anti-parallel
Strand 6
C
35 39anti-parallel
Strand 7
C
2 7parallel
Strand 8
C
225 229parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 71first strand
Strand 2
C
44 47parallel
Strand 3
C
79 81anti-parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
122 123first strand
Strand 2
D
139 141anti-parallel
Strand 3
D
144 154anti-parallel
Strand 4
D
157 165anti-parallel
Strand 5
D
85 93anti-parallel
Strand 6
D
35 39anti-parallel
Strand 7
D
2 7parallel
Strand 8
D
225 229parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
68 71first strand
Strand 2
D
44 47parallel
Strand 3
D
79 81anti-parallel
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