Analysis of interatomic Contacts of Structural Units in PDB entry:
2C8T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2C8T entry

There are 14 chains in PDB entry 2C8T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 15	HIS 194
B	SER 15	HIS 194
C	SER 15	HIS 194
D	SER 15	HIS 194
E	SER 15	HIS 194
F	SER 15	HIS 194
G	SER 15	HIS 194
H	SER 15	HIS 194
I	SER 15	HIS 194
J	SER 15	HIS 194
K	SER 15	HIS 194
L	SER 15	HIS 194
M	SER 15	HIS 194
N	SER 15	HIS 194

There are 98 helices in PDB entry 2C8T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	15	26	Right-handed alpha
Helix 2	2	A	37	55	Right-handed alpha
Helix 3	3	A	70	84	Right-handed alpha
Helix 4	4	A	98	106	Right-handed alpha
Helix 5	5	A	136	159	Right-handed alpha
Helix 6	6	A	161	171	Right-handed alpha
Helix 7	7	A	177	184	Right-handed alpha
Helix 8	8	B	16	26	Right-handed alpha
Helix 9	9	B	37	55	Right-handed alpha
Helix 10	10	B	70	84	Right-handed alpha
Helix 11	11	B	98	106	Right-handed alpha
Helix 12	12	B	136	159	Right-handed alpha
Helix 13	13	B	161	171	Right-handed alpha
Helix 14	14	B	177	184	Right-handed alpha
Helix 15	15	C	16	26	Right-handed alpha
Helix 16	16	C	37	55	Right-handed alpha
Helix 17	17	C	70	84	Right-handed alpha
Helix 18	18	C	98	106	Right-handed alpha
Helix 19	19	C	136	159	Right-handed alpha
Helix 20	20	C	161	171	Right-handed alpha
Helix 21	21	C	176	184	Right-handed alpha
Helix 22	22	D	16	26	Right-handed alpha
Helix 23	23	D	37	55	Right-handed alpha
Helix 24	24	D	70	84	Right-handed alpha
Helix 25	25	D	98	106	Right-handed alpha
Helix 26	26	D	136	159	Right-handed alpha
Helix 27	27	D	161	171	Right-handed alpha
Helix 28	28	D	177	184	Right-handed alpha
Helix 29	29	E	16	26	Right-handed alpha
Helix 30	30	E	37	55	Right-handed alpha
Helix 31	31	E	70	84	Right-handed alpha
Helix 32	32	E	98	106	Right-handed alpha
Helix 33	33	E	136	159	Right-handed alpha
Helix 34	34	E	161	171	Right-handed alpha
Helix 35	35	E	177	184	Right-handed alpha
Helix 36	36	F	16	26	Right-handed alpha
Helix 37	37	F	37	55	Right-handed alpha
Helix 38	38	F	70	84	Right-handed alpha
Helix 39	39	F	98	106	Right-handed alpha
Helix 40	40	F	136	159	Right-handed alpha
Helix 41	41	F	161	171	Right-handed alpha
Helix 42	42	F	177	184	Right-handed alpha
Helix 43	43	G	16	26	Right-handed alpha
Helix 44	44	G	37	55	Right-handed alpha
Helix 45	45	G	70	84	Right-handed alpha
Helix 46	46	G	98	106	Right-handed alpha
Helix 47	47	G	136	159	Right-handed alpha
Helix 48	48	G	161	171	Right-handed alpha
Helix 49	49	G	177	184	Right-handed alpha
Helix 50	50	H	16	26	Right-handed alpha
Helix 51	51	H	37	55	Right-handed alpha
Helix 52	52	H	70	84	Right-handed alpha
Helix 53	53	H	98	106	Right-handed alpha
Helix 54	54	H	136	159	Right-handed alpha
Helix 55	55	H	161	171	Right-handed alpha
Helix 56	56	H	177	184	Right-handed alpha
Helix 57	57	I	16	26	Right-handed alpha
Helix 58	58	I	37	55	Right-handed alpha
Helix 59	59	I	70	84	Right-handed alpha
Helix 60	60	I	98	106	Right-handed alpha
Helix 61	61	I	136	159	Right-handed alpha
Helix 62	62	I	161	171	Right-handed alpha
Helix 63	63	I	177	184	Right-handed alpha
Helix 64	64	J	16	26	Right-handed alpha
Helix 65	65	J	37	55	Right-handed alpha
Helix 66	66	J	70	84	Right-handed alpha
Helix 67	67	J	98	106	Right-handed alpha
Helix 68	68	J	136	159	Right-handed alpha
Helix 69	69	J	161	171	Right-handed alpha
Helix 70	70	J	177	184	Right-handed alpha
Helix 71	71	K	16	26	Right-handed alpha
Helix 72	72	K	37	55	Right-handed alpha
Helix 73	73	K	70	84	Right-handed alpha
Helix 74	74	K	98	106	Right-handed alpha
Helix 75	75	K	136	159	Right-handed alpha
Helix 76	76	K	161	171	Right-handed alpha
Helix 77	77	K	177	184	Right-handed alpha
Helix 78	78	L	16	26	Right-handed alpha
Helix 79	79	L	37	55	Right-handed alpha
Helix 80	80	L	70	84	Right-handed alpha
Helix 81	81	L	98	106	Right-handed alpha
Helix 82	82	L	136	159	Right-handed alpha
Helix 83	83	L	161	171	Right-handed alpha
Helix 84	84	L	176	184	Right-handed alpha
Helix 85	85	M	16	26	Right-handed alpha
Helix 86	86	M	37	55	Right-handed alpha
Helix 87	87	M	70	84	Right-handed alpha
Helix 88	88	M	98	106	Right-handed alpha
Helix 89	89	M	136	159	Right-handed alpha
Helix 90	90	M	161	171	Right-handed alpha
Helix 91	91	M	177	184	Right-handed alpha
Helix 92	92	N	16	26	Right-handed alpha
Helix 93	93	N	37	55	Right-handed alpha
Helix 94	94	N	70	84	Right-handed alpha
Helix 95	95	N	98	106	Right-handed alpha
Helix 96	96	N	136	159	Right-handed alpha
Helix 97	97	N	161	171	Right-handed alpha
Helix 98	98	N	177	184	Right-handed alpha

There are 17 sheets in PDB entry 2C8T. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, EA, FA, GA, HA, IA, JA, KA, LA, MA, NA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	60	66	parallel
Strand 3	A	88	97	parallel
Strand 4	A	112	114	parallel
Strand 5	A	188	189	parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	60	66	parallel
Strand 3	A	88	97	parallel
Strand 4	A	119	121	parallel
Strand 5	A	174	176	anti-parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	60	66	parallel
Strand 3	B	88	97	parallel
Strand 4	B	112	114	parallel
Strand 5	B	188	189	parallel

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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	60	66	parallel
Strand 3	B	88	97	parallel
Strand 4	B	119	121	parallel
Strand 5	B	174	176	anti-parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	60	66	parallel
Strand 3	C	88	97	parallel
Strand 4	C	112	114	parallel
Strand 5	C	188	189	parallel

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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	60	66	parallel
Strand 3	C	88	97	parallel
Strand 4	C	119	121	parallel
Strand 5	C	174	175	anti-parallel

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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	60	66	parallel
Strand 3	D	88	97	parallel
Strand 4	D	174	176	first strand
Strand 5	D	119	121	anti-parallel
Strand 6	D	88	97	parallel
Strand 7	D	188	189	first strand
Strand 8	D	112	114	parallel
Strand 9	D	88	97	parallel

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There are 9 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	60	66	parallel
Strand 3	E	88	97	parallel
Strand 4	E	174	176	first strand
Strand 5	E	119	121	anti-parallel
Strand 6	E	88	97	parallel
Strand 7	E	188	189	first strand
Strand 8	E	112	114	parallel
Strand 9	E	88	97	parallel

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There are 9 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	32	first strand
Strand 2	F	60	66	parallel
Strand 3	F	88	97	parallel
Strand 4	F	174	176	first strand
Strand 5	F	119	121	anti-parallel
Strand 6	F	88	97	parallel
Strand 7	F	188	189	first strand
Strand 8	F	112	114	parallel
Strand 9	F	88	97	parallel

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There are 9 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	32	first strand
Strand 2	G	60	66	parallel
Strand 3	G	88	97	parallel
Strand 4	G	174	176	first strand
Strand 5	G	119	121	anti-parallel
Strand 6	G	88	97	parallel
Strand 7	G	188	189	first strand
Strand 8	G	112	114	parallel
Strand 9	G	88	97	parallel

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There are 9 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	32	first strand
Strand 2	H	60	66	parallel
Strand 3	H	88	97	parallel
Strand 4	H	174	176	first strand
Strand 5	H	119	121	anti-parallel
Strand 6	H	88	97	parallel
Strand 7	H	188	189	first strand
Strand 8	H	112	114	parallel
Strand 9	H	88	97	parallel

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There are 9 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	32	first strand
Strand 2	I	60	66	parallel
Strand 3	I	88	97	parallel
Strand 4	I	174	176	first strand
Strand 5	I	119	121	anti-parallel
Strand 6	I	88	97	parallel
Strand 7	I	188	189	first strand
Strand 8	I	112	114	parallel
Strand 9	I	88	97	parallel

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There are 9 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	29	32	first strand
Strand 2	J	60	66	parallel
Strand 3	J	88	97	parallel
Strand 4	J	174	176	first strand
Strand 5	J	119	121	anti-parallel
Strand 6	J	88	97	parallel
Strand 7	J	188	189	first strand
Strand 8	J	112	114	parallel
Strand 9	J	88	97	parallel

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There are 9 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	32	first strand
Strand 2	K	60	66	parallel
Strand 3	K	88	97	parallel
Strand 4	K	174	176	first strand
Strand 5	K	119	121	anti-parallel
Strand 6	K	88	97	parallel
Strand 7	K	188	189	first strand
Strand 8	K	112	114	parallel
Strand 9	K	88	97	parallel

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There are 9 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	32	first strand
Strand 2	L	60	66	parallel
Strand 3	L	88	97	parallel
Strand 4	L	174	175	first strand
Strand 5	L	119	121	anti-parallel
Strand 6	L	88	97	parallel
Strand 7	L	188	189	first strand
Strand 8	L	112	114	parallel
Strand 9	L	88	97	parallel

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There are 9 strands in MA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	29	32	first strand
Strand 2	M	60	66	parallel
Strand 3	M	88	97	parallel
Strand 4	M	174	176	first strand
Strand 5	M	119	121	anti-parallel
Strand 6	M	88	97	parallel
Strand 7	M	188	189	first strand
Strand 8	M	112	114	parallel
Strand 9	M	88	97	parallel

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There are 9 strands in NA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	29	32	first strand
Strand 2	N	60	66	parallel
Strand 3	N	88	97	parallel
Strand 4	N	174	176	first strand
Strand 5	N	119	121	anti-parallel
Strand 6	N	88	97	parallel
Strand 7	N	188	189	first strand
Strand 8	N	112	114	parallel
Strand 9	N	88	97	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2C8T

Analysis of interatomic Contacts of Structural Units in PDB entry:
2C8T