Analysis of interatomic Contacts of Structural Units in PDB entry:
2CAR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CAR entry

There are 2 chains in PDB entry 2CAR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1ALA 194
B
 MET 1ALA 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2CAR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 6Right-handed alpha
Helix 2
2
A
16 28Right-handed alpha
Helix 3
3
A
48 65Right-handed alpha
Helix 4
4
A
79 81Right-handed 310
Helix 5
5
A
87 103Right-handed alpha
Helix 6
6
A
151 153Right-handed 310
Helix 7
7
A
168 176Right-handed alpha
Helix 8
8
A
176 190Right-handed alpha
Helix 9
9
B
1 6Right-handed alpha
Helix 10
10
B
16 28Right-handed alpha
Helix 11
11
B
48 65Right-handed alpha
Helix 12
12
B
79 81Right-handed 310
Helix 13
13
B
87 103Right-handed alpha
Helix 14
14
B
151 153Right-handed 310
Helix 15
15
B
168 176Right-handed alpha
Helix 16
16
B
176 190Right-handed alpha
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There are 4 sheets in PDB entry 2CAR. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
9 13parallel
Strand 3
A
68 77parallel
Strand 4
A
111 121anti-parallel
Strand 5
A
130 140anti-parallel
Strand 6
A
155 157anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
9 13parallel
Strand 3
A
68 77parallel
Strand 4
A
84 85anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
9 13parallel
Strand 3
B
68 77parallel
Strand 4
B
111 121anti-parallel
Strand 5
B
130 140anti-parallel
Strand 6
B
155 157anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
9 13parallel
Strand 3
B
68 77parallel
Strand 4
B
84 85anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il