Analysis of interatomic Contacts of Structural Units in PDB entry:
2CB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CB0 entry

There are 2 chains in PDB entry 2CB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ASP 320
B
 MSE 1HIS 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 2CB0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 8Right-handed alpha
Helix 2
2
A
9 25Right-handed alpha
Helix 3
3
A
40 56Right-handed alpha
Helix 4
4
A
65 72Right-handed alpha
Helix 5
5
A
73 75Right-handed 310
Helix 6
6
A
92 101Right-handed alpha
Helix 7
7
A
114 119Right-handed alpha
Helix 8
8
A
136 154Right-handed alpha
Helix 9
9
A
160 173Right-handed alpha
Helix 10
10
A
174 185Right-handed alpha
Helix 11
11
A
197 214Right-handed alpha
Helix 12
12
A
223 227Right-handed 310
Helix 13
13
A
228 233Right-handed 310
Helix 14
14
A
247 260Right-handed alpha
Helix 15
15
A
293 309Right-handed alpha
Helix 16
16
B
1 9Right-handed alpha
Helix 17
17
B
9 25Right-handed alpha
Helix 18
18
B
40 56Right-handed alpha
Helix 19
19
B
65 72Right-handed alpha
Helix 20
20
B
73 75Right-handed 310
Helix 21
21
B
92 101Right-handed alpha
Helix 22
22
B
114 119Right-handed alpha
Helix 23
23
B
136 154Right-handed alpha
Helix 24
24
B
160 173Right-handed alpha
Helix 25
25
B
174 185Right-handed alpha
Helix 26
26
B
197 214Right-handed alpha
Helix 27
27
B
223 227Right-handed 310
Helix 28
28
B
228 233Right-handed 310
Helix 29
29
B
247 259Right-handed alpha
Helix 30
30
B
293 309Right-handed alpha
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There are 4 sheets in PDB entry 2CB0. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
33 38parallel
Strand 3
A
82 86parallel
Strand 4
A
106 110parallel
Strand 5
A
122 125parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 221first strand
Strand 2
A
189 194parallel
Strand 3
A
237 243parallel
Strand 4
A
263 268parallel
Strand 5
A
278 281parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 64first strand
Strand 2
B
33 38parallel
Strand 3
B
82 86parallel
Strand 4
B
106 110parallel
Strand 5
B
122 125parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 221first strand
Strand 2
B
189 194parallel
Strand 3
B
237 243parallel
Strand 4
B
263 268parallel
Strand 5
B
278 281parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il