Analysis of interatomic Contacts of Structural Units in PDB entry:
2CB7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CB7 entry

There is 1 chain in PDB entry 2CB7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 1049
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 2CB7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 15Right-handed alpha
Helix 2
2
A
26 31Right-handed alpha
Helix 3
3
A
47 65Right-handed alpha
Helix 4
4
A
93 98Right-handed alpha
Helix 5
5
A
104 113Right-handed alpha
Helix 6
6
A
132 136Right-handed 310
Helix 7
7
A
179 194Right-handed alpha
Helix 8
8
A
204 209Right-handed alpha
Helix 9
9
A
209 220Right-handed alpha
Helix 10
10
A
227 243Right-handed alpha
Helix 11
11
A
244 246Right-handed 310
Helix 12
12
A
249 262Right-handed alpha
Helix 13
13
A
301 305Right-handed 310
Helix 14
14
A
320 328Right-handed alpha
Helix 15
15
A
331 342Right-handed alpha
Helix 16
16
A
356 372Right-handed alpha
Helix 17
17
A
391 410Right-handed alpha
Helix 18
18
A
450 468Right-handed alpha
Helix 19
19
A
473 479Right-handed alpha
Helix 20
20
A
493 500Right-handed alpha
Helix 21
21
A
505 509Right-handed 310
Helix 22
22
A
566 580Right-handed alpha
Helix 23
23
A
629 634Right-handed alpha
Helix 24
24
A
645 660Right-handed alpha
Helix 25
25
A
670 675Right-handed alpha
Helix 26
26
A
675 686Right-handed alpha
Helix 27
27
A
691 695Right-handed 310
Helix 28
28
A
723 727Right-handed 310
Helix 29
29
A
738 742Right-handed 310
Helix 30
30
A
743 747Right-handed 310
Helix 31
31
A
756 760Right-handed 310
Helix 32
32
A
764 769Right-handed 310
Helix 33
33
A
773 777Right-handed 310
Helix 34
34
A
790 795Right-handed alpha
Helix 35
35
A
799 807Right-handed alpha
Helix 36
36
A
880 890Right-handed alpha
Helix 37
37
A
910 915Right-handed alpha
Helix 38
38
A
921 926Right-handed alpha
Helix 39
39
A
949 954Right-handed alpha
Helix 40
40
A
962 973Right-handed alpha
Helix 41
41
A
974 977Right-handed 310
Helix 42
42
A
979 993Right-handed alpha
Helix 43
43
A
1004 1009Right-handed alpha
Helix 44
44
A
1037 1047Right-handed alpha
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There are 11 sheets in PDB entry 2CB7. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
288 290anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
89 91anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
384 388anti-parallel
Strand 3
A
376 379anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 154first strand
Strand 2
A
157 162anti-parallel
Strand 3
A
171 175anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 426first strand
Strand 2
A
429 431anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 539first strand
Strand 2
A
523 528anti-parallel
Strand 3
A
584 586parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
609 610first strand
Strand 2
A
613 614anti-parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
817 824first strand
Strand 2
A
827 834anti-parallel
Strand 3
A
840 844anti-parallel
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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
850 854first strand
Strand 2
A
860 865anti-parallel
Strand 3
A
875 878anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
904 908first strand
Strand 2
A
1024 1028parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
996 997first strand
Strand 2
A
1002 1003anti-parallel
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