Analysis of interatomic Contacts of Structural Units in PDB entry:
2CBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CBF entry

There is 1 chain in PDB entry 2CBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 18PRO 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2CBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 44Right-handed alpha
Helix 2
2
A
59 64Right-handed alpha
Helix 3
3
A
79 91Right-handed alpha
Helix 4
4
A
111 119Right-handed alpha
Helix 5
5
A
132 139Right-handed alpha
Helix 6
6
A
166 168Right-handed 310
Helix 7
7
A
170 176Right-handed alpha
Helix 8
8
A
186 199Right-handed 310
Helix 9
9
A
225 234Right-handed 310
Helix 10
10
A
247 249Right-handed 310
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There are 2 sheets in PDB entry 2CBF. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
22 27parallel
Strand 3
A
96 100parallel
Strand 4
A
49 53parallel
Strand 5
A
70 74parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
180 183parallel
Strand 3
A
241 245anti-parallel
Strand 4
A
206 211anti-parallel
Strand 5
A
219 224anti-parallel
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