Analysis of interatomic Contacts of Structural Units in PDB entry:
2CBL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CBL entry

There are 3 chains in PDB entry 2CBL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 47GLY 351
B
 SER 4GLY 6
B
 THR 8ALA 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 2CBL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 71Right-handed alpha
Helix 2
2
A
73 75Right-handed 310
Helix 3
3
A
84 102Right-handed alpha
Helix 4
4
A
105 111Right-handed 310
Helix 5
5
A
113 136Right-handed alpha
Helix 6
6
A
146 168Right-handed alpha
Helix 7
7
A
170 172Right-handed 310
Helix 8
8
A
184 194Right-handed alpha
Helix 9
9
A
202 212Right-handed alpha
Helix 10
10
A
218 228Right-handed alpha
Helix 11
11
A
238 247Right-handed alpha
Helix 12
12
A
251 261Right-handed 310
Helix 13
13
A
274 284Right-handed alpha
Helix 14
14
A
324 333Right-handed alpha
Helix 15
15
A
340 342Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 2CBL. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
235 237anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 295first strand
Strand 2
A
303 308anti-parallel
Strand 3
A
314 317anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il