Analysis of interatomic Contacts of Structural Units in PDB entry:
2CCL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CCL entry

There are 4 chains in PDB entry 2CCL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5HIS 153
B
 VAL -2ILE 59
C
 GLY 5HIS 153
D
 VAL -2ILE 59
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2CCL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 67Right-handed 310
Helix 2
2
B
10 22Right-handed alpha
Helix 3
3
B
28 36Right-handed alpha
Helix 4
4
B
44 56Right-handed alpha
Helix 5
5
C
64 67Right-handed 310
Helix 6
6
D
10 22Right-handed alpha
Helix 7
7
D
28 36Right-handed alpha
Helix 8
8
D
44 56Right-handed alpha
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There are 4 sheets in PDB entry 2CCL. Click on sheet of interest to get list of strands forming it: AA, AB, CA, CB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 56first strand
Strand 2
A
99 108anti-parallel
Strand 3
A
20 28anti-parallel
Strand 4
A
6 10anti-parallel
Strand 5
A
134 137parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
139 141parallel
Strand 3
A
114 125anti-parallel
Strand 4
A
37 43anti-parallel
Strand 5
A
79 85anti-parallel
Strand 6
A
69 74anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 56first strand
Strand 2
C
99 108anti-parallel
Strand 3
C
20 28anti-parallel
Strand 4
C
6 10anti-parallel
Strand 5
C
134 137parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
139 141parallel
Strand 3
C
114 126anti-parallel
Strand 4
C
35 43anti-parallel
Strand 5
C
79 85anti-parallel
Strand 6
C
69 74anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il