Analysis of interatomic Contacts of Structural Units in PDB entry:
2CD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CD8 entry

There are 2 chains in PDB entry 2CD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 14TRP 405
B
 VAL 14ARG 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 2CD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 27Right-handed alpha
Helix 2
2
A
28 37Right-handed alpha
Helix 3
3
A
57 67Right-handed alpha
Helix 4
4
A
73 77Right-handed 310
Helix 5
5
A
84 88Right-handed 310
Helix 6
6
A
91 95Right-handed 310
Helix 7
7
A
98 108Right-handed alpha
Helix 8
8
A
109 111Right-handed 310
Helix 9
9
A
112 118Right-handed alpha
Helix 10
10
A
119 136Right-handed alpha
Helix 11
11
A
144 148Right-handed alpha
Helix 12
12
A
150 162Right-handed alpha
Helix 13
13
A
164 166Right-handed 310
Helix 14
14
A
167 180Right-handed alpha
Helix 15
15
A
185 206Right-handed alpha
Helix 16
16
A
212 224Right-handed alpha
Helix 17
17
A
229 243Right-handed alpha
Helix 18
18
A
244 261Right-handed alpha
Helix 19
19
A
262 272Right-handed alpha
Helix 20
20
A
275 288Right-handed alpha
Helix 21
21
A
318 323Right-handed alpha
Helix 22
22
A
356 374Right-handed alpha
Helix 23
23
A
383 387Right-handed 310
Helix 24
24
B
20 27Right-handed alpha
Helix 25
25
B
28 39Right-handed alpha
Helix 26
26
B
57 67Right-handed alpha
Helix 27
27
B
73 77Right-handed 310
Helix 28
28
B
82 87Right-handed alpha
Helix 29
29
B
91 95Right-handed 310
Helix 30
30
B
98 108Right-handed alpha
Helix 31
31
B
109 111Right-handed 310
Helix 32
32
B
112 117Right-handed alpha
Helix 33
33
B
119 135Right-handed alpha
Helix 34
34
B
144 148Right-handed alpha
Helix 35
35
B
150 160Right-handed alpha
Helix 36
36
B
164 166Right-handed 310
Helix 37
37
B
167 180Right-handed alpha
Helix 38
38
B
183 206Right-handed alpha
Helix 39
39
B
212 224Right-handed alpha
Helix 40
40
B
229 243Right-handed alpha
Helix 41
41
B
245 262Right-handed alpha
Helix 42
42
B
262 271Right-handed alpha
Helix 43
43
B
272 274Right-handed 310
Helix 44
44
B
275 288Right-handed alpha
Helix 45
45
B
318 323Right-handed alpha
Helix 46
46
B
356 375Right-handed alpha
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There are 8 sheets in PDB entry 2CD8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
51 55anti-parallel
Strand 3
A
315 317parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
297 298anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
402 404anti-parallel
Strand 3
A
379 380anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 304first strand
Strand 2
A
307 309anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
41 45parallel
Strand 3
B
51 55anti-parallel
Strand 4
B
315 317parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
B
297 298anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 143first strand
Strand 2
B
402 404anti-parallel
Strand 3
B
379 380anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 304first strand
Strand 2
B
307 309anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il