Analysis of interatomic Contacts of Structural Units in PDB entry:
2CF4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CF4 entry

There is 1 chain in PDB entry 2CF4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2CF4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 13Right-handed alpha
Helix 2
2
A
20 30Right-handed alpha
Helix 3
3
A
87 91Right-handed 310
Helix 4
4
A
138 144Right-handed alpha
Helix 5
5
A
170 186Right-handed alpha
Helix 6
6
A
187 191Right-handed 310
Helix 7
7
A
208 215Right-handed alpha
Helix 8
8
A
257 270Right-handed alpha
Helix 9
9
A
284 289Right-handed 310
Helix 10
10
A
314 322Right-handed alpha
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There are 3 sheets in PDB entry 2CF4. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
45 47anti-parallel
Strand 3
A
197 201anti-parallel
Strand 4
A
57 61parallel
Strand 5
A
223 225parallel
Strand 6
A
295 303parallel
Strand 7
A
228 230parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
45 47anti-parallel
Strand 3
A
197 201anti-parallel
Strand 4
A
57 61parallel
Strand 5
A
223 225parallel
Strand 6
A
295 303parallel
Strand 7
A
246 250anti-parallel
Strand 8
A
276 279parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
66 72anti-parallel
Strand 3
A
151 154anti-parallel
Strand 4
A
95 99anti-parallel
Strand 5
A
104 108anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il