Analysis of interatomic Contacts of Structural Units in PDB entry:
2CF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CF5 entry

There is 1 chain in PDB entry 2CF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6ALA 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2CF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 55Right-handed alpha
Helix 2
2
A
103 108Right-handed alpha
Helix 3
3
A
110 114Right-handed 310
Helix 4
4
A
154 159Right-handed alpha
Helix 5
5
A
160 162Right-handed 310
Helix 6
6
A
163 175Right-handed alpha
Helix 7
7
A
190 203Right-handed alpha
Helix 8
8
A
215 222Right-handed alpha
Helix 9
9
A
234 241Right-handed alpha
Helix 10
10
A
258 263Right-handed alpha
Helix 11
11
A
284 292Right-handed alpha
Helix 12
12
A
302 316Right-handed alpha
Helix 13
13
A
329 339Right-handed alpha
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There are 5 sheets in PDB entry 2CF5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 15first strand
Strand 2
A
22 28anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
36 46anti-parallel
Strand 3
A
70 78anti-parallel
Strand 4
A
90 93anti-parallel
Strand 5
A
146 148anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
36 46anti-parallel
Strand 3
A
345 349anti-parallel
Strand 4
A
322 326parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
118 119anti-parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 231first strand
Strand 2
A
206 211parallel
Strand 3
A
183 187parallel
Strand 4
A
245 250parallel
Strand 5
A
265 273parallel
Strand 6
A
294 297parallel
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