Analysis of interatomic Contacts of Structural Units in PDB entry:
2CF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CF6 entry

There is 1 chain in PDB entry 2CF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6ALA 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2CF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 56Right-handed alpha
Helix 2
2
A
103 107Right-handed 310
Helix 3
3
A
159 162Right-handed 310
Helix 4
4
A
163 168Right-handed alpha
Helix 5
5
A
170 175Right-handed alpha
Helix 6
6
A
191 203Right-handed alpha
Helix 7
7
A
214 218Right-handed 310
Helix 8
8
A
234 239Right-handed alpha
Helix 9
9
A
257 263Right-handed alpha
Helix 10
10
A
284 292Right-handed alpha
Helix 11
11
A
302 316Right-handed alpha
Helix 12
12
A
326 328Right-handed 310
Helix 13
13
A
329 339Right-handed alpha
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There are 6 sheets in PDB entry 2CF6. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
27 28anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 78first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
138 142anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
91 93anti-parallel
Strand 3
A
146 148anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
130 131anti-parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 231first strand
Strand 2
A
205 211parallel
Strand 3
A
181 187parallel
Strand 4
A
245 250parallel
Strand 5
A
265 273parallel
Strand 6
A
294 297parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
346 348parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il