Analysis of interatomic Contacts of Structural Units in PDB entry:
2CFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CFB entry

There is 1 chain in PDB entry 2CFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 19LEU 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2CFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 66Right-handed alpha
Helix 2
2
A
76 89Right-handed alpha
Helix 3
3
A
101 116Right-handed alpha
Helix 4
4
A
170 180Right-handed alpha
Helix 5
5
A
205 216Right-handed alpha
Helix 6
6
A
236 241Right-handed alpha
Helix 7
7
A
251 255Right-handed 310
Helix 8
8
A
266 270Right-handed alpha
Helix 9
9
A
288 302Right-handed alpha
Helix 10
10
A
306 327Right-handed alpha
Helix 11
11
A
352 358Right-handed alpha
Helix 12
12
A
361 374Right-handed alpha
Helix 13
13
A
394 409Right-handed alpha
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There are 3 sheets in PDB entry 2CFB. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
29 32anti-parallel
Strand 3
A
35 40anti-parallel
Strand 4
A
376 377parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 98first strand
Strand 2
A
260 264anti-parallel
Strand 3
A
246 249anti-parallel
Strand 4
A
219 224parallel
Strand 5
A
184 189parallel
Strand 6
A
120 125parallel
Strand 7
A
162 166parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 337first strand
Strand 2
A
340 344anti-parallel
Strand 3
A
386 389anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il