Analysis of interatomic Contacts of Structural Units in PDB entry:
2CFO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CFO entry

There are 2 chains in PDB entry 2CFO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2SER 485
B
 THR 2HIS 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 2CFO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 33Right-handed alpha
Helix 2
2
A
51 64Right-handed alpha
Helix 3
3
A
79 92Right-handed alpha
Helix 4
4
A
102 115Right-handed alpha
Helix 5
5
A
130 139Right-handed alpha
Helix 6
6
A
192 203Right-handed alpha
Helix 7
7
A
217 228Right-handed alpha
Helix 8
8
A
258 264Right-handed alpha
Helix 9
9
A
268 277Right-handed alpha
Helix 10
10
A
292 298Right-handed alpha
Helix 11
11
A
313 325Right-handed alpha
Helix 12
12
A
329 343Right-handed alpha
Helix 13
13
A
352 364Right-handed alpha
Helix 14
14
A
372 381Right-handed alpha
Helix 15
15
A
389 396Right-handed alpha
Helix 16
16
A
399 410Right-handed alpha
Helix 17
17
A
419 433Right-handed alpha
Helix 18
18
A
437 449Right-handed alpha
Helix 19
19
A
457 467Right-handed alpha
Helix 20
20
A
469 485Right-handed alpha
Helix 21
21
B
17 33Right-handed alpha
Helix 22
22
B
51 64Right-handed alpha
Helix 23
23
B
79 92Right-handed alpha
Helix 24
24
B
102 115Right-handed alpha
Helix 25
25
B
130 139Right-handed alpha
Helix 26
26
B
192 203Right-handed alpha
Helix 27
27
B
217 228Right-handed alpha
Helix 28
28
B
258 264Right-handed alpha
Helix 29
29
B
268 277Right-handed alpha
Helix 30
30
B
292 298Right-handed alpha
Helix 31
31
B
313 325Right-handed alpha
Helix 32
32
B
329 343Right-handed alpha
Helix 33
33
B
352 364Right-handed alpha
Helix 34
34
B
371 381Right-handed alpha
Helix 35
35
B
389 396Right-handed alpha
Helix 36
36
B
399 410Right-handed alpha
Helix 37
37
B
419 433Right-handed alpha
Helix 38
38
B
437 449Right-handed alpha
Helix 39
39
B
457 467Right-handed alpha
Helix 40
40
B
469 485Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 2CFO. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
36 41parallel
Strand 3
A
70 74parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
144 147anti-parallel
Strand 3
A
176 180anti-parallel
Strand 4
A
189 191anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 159first strand
Strand 2
A
163 168anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 211first strand
Strand 2
A
234 238parallel
Back to list of sheets
Back to top of page

There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
36 41parallel
Strand 3
B
70 74parallel
Back to list of sheets
Back to top of page

There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 98first strand
Strand 2
B
144 147anti-parallel
Strand 3
B
176 180anti-parallel
Strand 4
B
189 191anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 159first strand
Strand 2
B
163 168anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 211first strand
Strand 2
B
234 238parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il