Analysis of interatomic Contacts of Structural Units in PDB entry:
2CFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CFV entry

There is 1 chain in PDB entry 2CFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -19ARG 1300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2CFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-11 -2Right-handed alpha
Helix 2
2
A
1025 1034Right-handed alpha
Helix 3
3
A
1038 1048Right-handed alpha
Helix 4
4
A
1049 1051Right-handed 310
Helix 5
5
A
1057 1062Right-handed alpha
Helix 6
6
A
1063 1069Right-handed 310
Helix 7
7
A
1077 1080Right-handed 310
Helix 8
8
A
1089 1094Right-handed 310
Helix 9
9
A
1116 1118Right-handed 310
Helix 10
10
A
1119 1130Right-handed alpha
Helix 11
11
A
1212 1223Right-handed alpha
Helix 12
12
A
1243 1262Right-handed alpha
Helix 13
13
A
1266 1276Right-handed alpha
Helix 14
14
A
1284 1299Right-handed alpha
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There are 2 sheets in PDB entry 2CFV. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1021 1022first strand
Strand 2
A
1264 1265anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1097 1100first strand
Strand 2
A
1109 1112anti-parallel
Strand 3
A
1235 1238parallel
Strand 4
A
1134 1137parallel
Strand 5
A
1192 1199parallel
Strand 6
A
1178 1186anti-parallel
Strand 7
A
1164 1173anti-parallel
Strand 8
A
1159 1161anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il