Analysis of interatomic Contacts of Structural Units in PDB entry:
2CGK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CGK entry

There are 2 chains in PDB entry 2CGK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2SER 480
B
 THR 2SER 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 2CGK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 70Right-handed alpha
Helix 2
2
A
109 118Right-handed alpha
Helix 3
3
A
119 128Right-handed alpha
Helix 4
4
A
135 147Right-handed alpha
Helix 5
5
A
150 154Right-handed 310
Helix 6
6
A
160 170Right-handed alpha
Helix 7
7
A
175 181Right-handed alpha
Helix 8
8
A
193 201Right-handed alpha
Helix 9
9
A
203 207Right-handed 310
Helix 10
10
A
236 244Right-handed alpha
Helix 11
11
A
273 279Right-handed alpha
Helix 12
12
A
286 290Right-handed 310
Helix 13
13
A
300 310Right-handed alpha
Helix 14
14
A
314 323Right-handed alpha
Helix 15
15
A
336 340Right-handed 310
Helix 16
16
A
344 356Right-handed alpha
Helix 17
17
A
363 391Right-handed alpha
Helix 18
18
A
401 405Right-handed 310
Helix 19
19
A
406 418Right-handed alpha
Helix 20
20
A
427 441Right-handed alpha
Helix 21
21
A
446 458Right-handed alpha
Helix 22
22
A
469 478Right-handed alpha
Helix 23
23
B
52 70Right-handed alpha
Helix 24
24
B
109 118Right-handed alpha
Helix 25
25
B
119 128Right-handed alpha
Helix 26
26
B
135 147Right-handed alpha
Helix 27
27
B
150 154Right-handed 310
Helix 28
28
B
160 170Right-handed alpha
Helix 29
29
B
175 181Right-handed alpha
Helix 30
30
B
193 201Right-handed alpha
Helix 31
31
B
203 207Right-handed 310
Helix 32
32
B
236 244Right-handed alpha
Helix 33
33
B
273 279Right-handed alpha
Helix 34
34
B
286 290Right-handed 310
Helix 35
35
B
300 310Right-handed alpha
Helix 36
36
B
314 323Right-handed alpha
Helix 37
37
B
336 340Right-handed 310
Helix 38
38
B
344 356Right-handed alpha
Helix 39
39
B
363 391Right-handed alpha
Helix 40
40
B
401 405Right-handed 310
Helix 41
41
B
406 418Right-handed alpha
Helix 42
42
B
427 441Right-handed alpha
Helix 43
43
B
446 458Right-handed alpha
Helix 44
44
B
469 478Right-handed alpha
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There are 10 sheets in PDB entry 2CGK. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
15 24anti-parallel
Strand 3
A
3 11anti-parallel
Strand 4
A
76 80parallel
Strand 5
A
227 231parallel
Strand 6
A
216 221anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
15 24anti-parallel
Strand 3
A
34 39anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
49 51anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
156 159anti-parallel
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There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 284first strand
Strand 2
A
291 297anti-parallel
Strand 3
A
261 267anti-parallel
Strand 4
A
252 256anti-parallel
Strand 5
A
396 400parallel
Strand 6
A
420 423parallel
Strand 7
A
461 463anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
15 24anti-parallel
Strand 3
B
3 11anti-parallel
Strand 4
B
76 80parallel
Strand 5
B
227 231parallel
Strand 6
B
216 221anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
15 24anti-parallel
Strand 3
B
34 39anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 44first strand
Strand 2
B
49 51anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 89first strand
Strand 2
B
156 159anti-parallel
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There are 7 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 284first strand
Strand 2
B
291 297anti-parallel
Strand 3
B
261 267anti-parallel
Strand 4
B
252 256anti-parallel
Strand 5
B
396 400parallel
Strand 6
B
420 423parallel
Strand 7
B
461 463anti-parallel
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