Analysis of interatomic Contacts of Structural Units in PDB entry:
2CJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CJB entry

There are 2 chains in PDB entry 2CJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2LEU 502
B
 GLY -3LEU 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2CJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 33Right-handed alpha
Helix 2
2
A
70 83Right-handed alpha
Helix 3
3
A
137 142Right-handed alpha
Helix 4
4
A
144 160Right-handed alpha
Helix 5
5
A
185 192Right-handed alpha
Helix 6
6
A
208 224Right-handed alpha
Helix 7
7
A
226 229Right-handed alpha
Helix 8
8
A
242 248Right-handed alpha
Helix 9
9
A
269 282Right-handed alpha
Helix 10
10
A
287 293Right-handed alpha
Helix 11
11
A
306 313Right-handed alpha
Helix 12
12
A
362 384Right-handed alpha
Helix 13
13
A
396 401Right-handed alpha
Helix 14
14
A
441 446Right-handed alpha
Helix 15
15
A
466 477Right-handed alpha
Helix 16
16
A
486 492Right-handed alpha
Helix 17
17
B
21 33Right-handed alpha
Helix 18
18
B
70 85Right-handed alpha
Helix 19
19
B
137 142Right-handed alpha
Helix 20
20
B
144 160Right-handed alpha
Helix 21
21
B
185 192Right-handed alpha
Helix 22
22
B
208 224Right-handed alpha
Helix 23
23
B
226 229Right-handed alpha
Helix 24
24
B
242 248Right-handed alpha
Helix 25
25
B
269 282Right-handed alpha
Helix 26
26
B
287 293Right-handed alpha
Helix 27
27
B
306 313Right-handed alpha
Helix 28
28
B
362 384Right-handed alpha
Helix 29
29
B
396 401Right-handed alpha
Helix 30
30
B
441 446Right-handed alpha
Helix 31
31
B
466 477Right-handed alpha
Helix 32
32
B
486 492Right-handed alpha
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There are 14 sheets in PDB entry 2CJB. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
58 64anti-parallel
Strand 3
A
4 11anti-parallel
Strand 4
A
96 106anti-parallel
Strand 5
A
127 133anti-parallel
Strand 6
A
119 124anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
388 393anti-parallel
Strand 3
A
413 419anti-parallel
Strand 4
A
431 438anti-parallel
Strand 5
A
458 465anti-parallel
Strand 6
A
350 360anti-parallel
Strand 7
A
325 329anti-parallel
Strand 8
A
232 235parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
204 206anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 241first strand
Strand 2
A
299 301anti-parallel
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There are 1 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 318first strand
Strand 2
A
448 452parallel
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There are 1 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 53first strand
Strand 2
B
58 64anti-parallel
Strand 3
B
4 11anti-parallel
Strand 4
B
96 106anti-parallel
Strand 5
B
127 133anti-parallel
Strand 6
B
119 124anti-parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 173first strand
Strand 2
B
388 393anti-parallel
Strand 3
B
413 419anti-parallel
Strand 4
B
431 438anti-parallel
Strand 5
B
458 465anti-parallel
Strand 6
B
350 360anti-parallel
Strand 7
B
325 329anti-parallel
Strand 8
B
232 235parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
B
204 206anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 241first strand
Strand 2
B
299 301anti-parallel
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There are 1 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 262first strand
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 318first strand
Strand 2
B
448 452parallel
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There are 1 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 335first strand
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