Analysis of interatomic Contacts of Structural Units in PDB entry:
2CJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CJF entry

There are 12 chains in PDB entry 2CJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2GLY 150
B
 ARG 202GLY 350
C
 ARG 402GLY 550
D
 ARG 602GLY 750
E
 ARG 802GLY 950
F
 ARG 1002GLY 1150
G
 ARG 1202GLY 1350
H
 ARG 1402GLY 1550
I
 ARG 1602GLY 1750
J
 ARG 1802GLY 1950
K
 ARG 2002GLY 2150
L
 ARG 2202GLY 2350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are114 helices in PDB entry 2CJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 20Right-handed 310
Helix 2
2
A
32 47Right-handed alpha
Helix 3
3
A
58 73Right-handed alpha
Helix 4
4
A
80 86Right-handed 310
Helix 5
5
A
87 97Right-handed alpha
Helix 6
6
A
109 113Right-handed 310
Helix 7
7
A
114 119Right-handed 310
Helix 8
8
A
121 125Right-handed 310
Helix 9
9
A
136 150Right-handed alpha
Helix 10
10
B
216 220Right-handed 310
Helix 11
11
B
224 229Right-handed alpha
Helix 12
12
B
232 246Right-handed alpha
Helix 13
13
B
258 273Right-handed alpha
Helix 14
14
B
280 285Right-handed 310
Helix 15
15
B
287 295Right-handed alpha
Helix 16
16
B
309 313Right-handed 310
Helix 17
17
B
314 318Right-handed 310
Helix 18
18
B
321 325Right-handed 310
Helix 19
19
B
335 350Right-handed alpha
Helix 20
20
C
416 420Right-handed 310
Helix 21
21
C
432 447Right-handed alpha
Helix 22
22
C
458 473Right-handed alpha
Helix 23
23
C
482 487Right-handed alpha
Helix 24
24
C
487 496Right-handed alpha
Helix 25
25
C
514 518Right-handed 310
Helix 26
26
C
521 525Right-handed 310
Helix 27
27
C
533 535Right-handed 310
Helix 28
28
C
536 550Right-handed alpha
Helix 29
29
D
616 620Right-handed 310
Helix 30
30
D
624 629Right-handed alpha
Helix 31
31
D
632 646Right-handed alpha
Helix 32
32
D
658 673Right-handed alpha
Helix 33
33
D
680 685Right-handed 310
Helix 34
34
D
687 696Right-handed alpha
Helix 35
35
D
714 718Right-handed 310
Helix 36
36
D
720 725Right-handed 310
Helix 37
37
D
735 750Right-handed alpha
Helix 38
38
E
816 820Right-handed 310
Helix 39
39
E
824 829Right-handed alpha
Helix 40
40
E
832 846Right-handed alpha
Helix 41
41
E
858 873Right-handed alpha
Helix 42
42
E
882 887Right-handed alpha
Helix 43
43
E
887 896Right-handed alpha
Helix 44
44
E
909 913Right-handed 310
Helix 45
45
E
914 918Right-handed 310
Helix 46
46
E
920 925Right-handed 310
Helix 47
47
E
935 949Right-handed alpha
Helix 48
48
F
1016 1020Right-handed 310
Helix 49
49
F
1032 1046Right-handed alpha
Helix 50
50
F
1058 1073Right-handed alpha
Helix 51
51
F
1080 1086Right-handed 310
Helix 52
52
F
1087 1097Right-handed alpha
Helix 53
53
F
1109 1113Right-handed 310
Helix 54
54
F
1114 1119Right-handed 310
Helix 55
55
F
1121 1125Right-handed 310
Helix 56
56
F
1135 1150Right-handed alpha
Helix 57
57
G
1216 1220Right-handed 310
Helix 58
58
G
1224 1229Right-handed alpha
Helix 59
59
G
1232 1246Right-handed alpha
Helix 60
60
G
1258 1273Right-handed alpha
Helix 61
61
G
1280 1285Right-handed 310
Helix 62
62
G
1287 1296Right-handed alpha
Helix 63
63
G
1309 1313Right-handed 310
Helix 64
64
G
1314 1318Right-handed 310
Helix 65
65
G
1321 1325Right-handed 310
Helix 66
66
G
1335 1349Right-handed alpha
Helix 67
67
H
1416 1420Right-handed 310
Helix 68
68
H
1424 1429Right-handed alpha
Helix 69
69
H
1432 1446Right-handed alpha
Helix 70
70
H
1458 1473Right-handed alpha
Helix 71
71
H
1480 1485Right-handed 310
Helix 72
72
H
1487 1496Right-handed alpha
Helix 73
73
H
1509 1513Right-handed 310
Helix 74
74
H
1515 1519Right-handed 310
Helix 75
75
H
1521 1525Right-handed 310
Helix 76
76
H
1535 1550Right-handed alpha
Helix 77
77
I
1616 1620Right-handed 310
Helix 78
78
I
1624 1629Right-handed alpha
Helix 79
79
I
1632 1646Right-handed alpha
Helix 80
80
I
1658 1673Right-handed alpha
Helix 81
81
I
1680 1685Right-handed 310
Helix 82
82
I
1687 1695Right-handed alpha
Helix 83
83
I
1709 1713Right-handed 310
Helix 84
84
I
1714 1719Right-handed 310
Helix 85
85
I
1721 1725Right-handed 310
Helix 86
86
I
1733 1735Right-handed 310
Helix 87
87
I
1736 1750Right-handed alpha
Helix 88
88
J
1832 1846Right-handed alpha
Helix 89
89
J
1858 1873Right-handed alpha
Helix 90
90
J
1880 1886Right-handed 310
Helix 91
91
J
1887 1896Right-handed alpha
Helix 92
92
J
1909 1913Right-handed 310
Helix 93
93
J
1914 1918Right-handed 310
Helix 94
94
J
1921 1925Right-handed 310
Helix 95
95
J
1935 1950Right-handed alpha
Helix 96
96
K
2016 2020Right-handed 310
Helix 97
97
K
2032 2046Right-handed alpha
Helix 98
98
K
2058 2073Right-handed alpha
Helix 99
99
K
2082 2087Right-handed alpha
Helix 100
100
K
2087 2096Right-handed alpha
Helix 101
101
K
2109 2113Right-handed 310
Helix 102
102
K
2114 2118Right-handed 310
Helix 103
103
K
2121 2125Right-handed 310
Helix 104
104
K
2136 2149Right-handed alpha
Helix 105
105
L
2216 2220Right-handed 310
Helix 106
106
L
2224 2229Right-handed alpha
Helix 107
107
L
2232 2246Right-handed alpha
Helix 108
108
L
2258 2273Right-handed alpha
Helix 109
109
L
2280 2285Right-handed 310
Helix 110
110
L
2287 2297Right-handed alpha
Helix 111
111
L
2309 2313Right-handed 310
Helix 112
112
L
2314 2319Right-handed 310
Helix 113
113
L
2321 2326Right-handed alpha
Helix 114
114
L
2335 2349Right-handed alpha
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There are 6 sheets in PDB entry 2CJF. Click on sheet of interest to get list of strands forming it: AA, BA, CA, EA, FA, IA,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
9 13parallel
Strand 3
A
76 79parallel
Strand 4
A
102 106parallel
Strand 5
A
128 131parallel
Strand 6
D
728 731anti-parallel
Strand 7
D
702 706parallel
Strand 8
D
676 679parallel
Strand 9
D
609 613parallel
Strand 10
D
651 655parallel
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 255first strand
Strand 2
B
209 213parallel
Strand 3
B
276 279parallel
Strand 4
B
302 306parallel
Strand 5
B
328 331parallel
Strand 6
G
1328 1331anti-parallel
Strand 7
G
1302 1306parallel
Strand 8
G
1275 1279parallel
Strand 9
G
1209 1213parallel
Strand 10
G
1251 1255parallel
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There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
451 455first strand
Strand 2
C
409 413parallel
Strand 3
C
476 479parallel
Strand 4
C
502 506parallel
Strand 5
C
528 531parallel
Strand 6
J
1928 1931anti-parallel
Strand 7
J
1902 1906parallel
Strand 8
J
1876 1879parallel
Strand 9
J
1809 1813parallel
Strand 10
J
1851 1855parallel
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There are 10 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
851 855first strand
Strand 2
E
809 813parallel
Strand 3
E
875 879parallel
Strand 4
E
902 906parallel
Strand 5
E
928 931parallel
Strand 6
L
2328 2331anti-parallel
Strand 7
L
2302 2306parallel
Strand 8
L
2276 2279parallel
Strand 9
L
2209 2213parallel
Strand 10
L
2251 2255parallel
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There are 10 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
1051 1055first strand
Strand 2
F
1009 1013parallel
Strand 3
F
1076 1079parallel
Strand 4
F
1102 1106parallel
Strand 5
F
1128 1131parallel
Strand 6
H
1528 1531anti-parallel
Strand 7
H
1502 1506parallel
Strand 8
H
1476 1479parallel
Strand 9
H
1409 1413parallel
Strand 10
H
1451 1455parallel
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There are 10 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
1651 1655first strand
Strand 2
I
1609 1613parallel
Strand 3
I
1676 1679parallel
Strand 4
I
1702 1706parallel
Strand 5
I
1728 1731parallel
Strand 6
K
2128 2131anti-parallel
Strand 7
K
2102 2106parallel
Strand 8
K
2075 2079parallel
Strand 9
K
2009 2013parallel
Strand 10
K
2051 2055parallel
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