Analysis of interatomic Contacts of Structural Units in PDB entry:
2CJQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CJQ entry

There is 1 chain in PDB entry 2CJQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 92LYS 672
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2CJQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
94 104Right-handed 310
Helix 2
2
A
136 147Right-handed alpha
Helix 3
3
A
164 173Right-handed alpha
Helix 4
4
A
183 193Right-handed alpha
Helix 5
5
A
197 201Right-handed 310
Helix 6
6
A
208 214Right-handed alpha
Helix 7
7
A
229 237Right-handed alpha
Helix 8
8
A
237 251Right-handed alpha
Helix 9
9
A
291 307Right-handed alpha
Helix 10
10
A
324 334Right-handed alpha
Helix 11
11
A
348 353Right-handed alpha
Helix 12
12
A
354 369Right-handed alpha
Helix 13
13
A
370 372Right-handed 310
Helix 14
14
A
373 385Right-handed alpha
Helix 15
15
A
409 431Right-handed alpha
Helix 16
16
A
456 474Right-handed alpha
Helix 17
17
A
480 484Right-handed 310
Helix 18
18
A
490 494Right-handed 310
Helix 19
19
A
518 528Right-handed alpha
Helix 20
20
A
538 554Right-handed alpha
Helix 21
21
A
556 567Right-handed alpha
Helix 22
22
A
586 596Right-handed alpha
Helix 23
23
A
598 600Right-handed 310
Helix 24
24
A
606 614Right-handed alpha
Helix 25
25
A
614 620Right-handed alpha
Helix 26
26
A
626 641Right-handed alpha
Helix 27
27
A
645 649Right-handed 310
Helix 28
28
A
650 658Right-handed alpha
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There are 4 sheets in PDB entry 2CJQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
395 400anti-parallel
Strand 3
A
386 391anti-parallel
Strand 4
A
258 262parallel
Strand 5
A
286 290anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 446first strand
Strand 2
A
449 455anti-parallel
Strand 3
A
339 344anti-parallel
Strand 4
A
487 488anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 516first strand
Strand 2
A
500 506anti-parallel
Strand 3
A
602 605anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 585first strand
Strand 2
A
666 670anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il