Analysis of interatomic Contacts of Structural Units in PDB entry:
2CJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CJS entry

There are 3 chains in PDB entry 2CJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -8SER 154
B
 ILE 0SER 155
C
 ALA 89GLU 142
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 2CJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 19Right-handed 310
Helix 2
2
A
83 85Right-handed 310
Helix 3
3
A
134 154Right-handed alpha
Helix 4
4
B
16 19Right-handed 310
Helix 5
5
B
83 85Right-handed 310
Helix 6
6
B
134 146Right-handed alpha
Helix 7
7
C
135 142Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 2CJS. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, CA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-7 -6first strand
Strand 2
C
120 125anti-parallel
Strand 3
C
129 134anti-parallel
Strand 4
B
72 81anti-parallel
Strand 5
B
59 66anti-parallel
Strand 6
B
21 28anti-parallel
Strand 7
B
38 39anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-7 -6first strand
Strand 2
C
120 125anti-parallel
Strand 3
C
129 134anti-parallel
Strand 4
B
72 81anti-parallel
Strand 5
B
59 66anti-parallel
Strand 6
B
21 28anti-parallel
Strand 7
B
31 34anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 106first strand
Strand 2
A
109 128anti-parallel
Strand 3
A
3 12anti-parallel
Strand 4
A
44 52anti-parallel
Strand 5
C
99 100parallel
Back to list of sheets
Back to top of page

There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
38 39anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
59 66anti-parallel
Strand 4
A
73 81anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 53first strand
Strand 2
B
2 12anti-parallel
Strand 3
B
110 128anti-parallel
Strand 4
B
86 87parallel
Back to list of sheets
Back to top of page

There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 53first strand
Strand 2
B
2 12anti-parallel
Strand 3
B
110 128anti-parallel
Strand 4
B
95 105anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 107first strand
Strand 2
C
114 115anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il