Analysis of interatomic Contacts of Structural Units in PDB entry:
2CM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CM6 entry

There are 2 chains in PDB entry 2CM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 524GLU 678
B
 ALA 1525GLU 1678
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 2CM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
526 531Right-handed 310
Helix 2
2
A
616 621Right-handed alpha
Helix 3
3
A
651 664Right-handed alpha
Helix 4
4
B
1525 1530Right-handed alpha
Helix 5
5
B
1588 1591Right-handed 310
Helix 6
6
B
1616 1621Right-handed alpha
Helix 7
7
B
1651 1664Right-handed alpha
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There are 4 sheets in PDB entry 2CM6. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 614first strand
Strand 2
A
556 565anti-parallel
Strand 3
A
543 551anti-parallel
Strand 4
A
669 674anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 595first strand
Strand 2
A
578 585anti-parallel
Strand 3
A
624 631anti-parallel
Strand 4
A
639 647anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1606 1614first strand
Strand 2
B
1556 1565anti-parallel
Strand 3
B
1543 1551anti-parallel
Strand 4
B
1669 1674anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1593 1595first strand
Strand 2
B
1578 1585anti-parallel
Strand 3
B
1624 1631anti-parallel
Strand 4
B
1639 1646anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il