Analysis of interatomic Contacts of Structural Units in PDB entry:
2CME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CME entry

There are 8 chains in PDB entry 2CME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 9LYS 98
B
 VAL 9LYS 98
C
 PRO 10LYS 98
D
 PRO 10LYS 98
E
 VAL 9LYS 98
F
 PRO 10LYS 98
G
 VAL 9LYS 98
H
 PRO 10LYS 98
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2CME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
84 88Right-handed 310
Helix 2
2
B
84 88Right-handed 310
Helix 3
3
D
84 88Right-handed 310
Helix 4
4
E
84 88Right-handed 310
Helix 5
5
F
84 88Right-handed 310
Helix 6
6
H
84 88Right-handed 310
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There are 10 sheets in PDB entry 2CME. Click on sheet of interest to get list of strands forming it: AA, AB, CA, CB, CC, EA, EB, EC, GA, GB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
54 59anti-parallel
Strand 3
B
91 96anti-parallel
Strand 4
B
42 47parallel
Strand 5
B
14 24anti-parallel
Strand 6
A
14 23anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
54 59anti-parallel
Strand 3
B
91 96anti-parallel
Strand 4
B
42 47parallel
Strand 5
B
14 24anti-parallel
Strand 6
B
80 81anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 81first strand
Strand 2
C
14 24anti-parallel
Strand 3
C
42 47anti-parallel
Strand 4
C
91 96parallel
Strand 5
D
54 60anti-parallel
Strand 6
D
70 74anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 81first strand
Strand 2
C
14 24anti-parallel
Strand 3
D
20 24anti-parallel
Strand 4
D
42 43anti-parallel
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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 74first strand
Strand 2
C
54 60anti-parallel
Strand 3
D
91 96anti-parallel
Strand 4
D
45 47parallel
Strand 5
D
14 16anti-parallel
Strand 6
D
80 81anti-parallel
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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
80 81first strand
Strand 2
E
14 24anti-parallel
Strand 3
E
42 47anti-parallel
Strand 4
E
91 96parallel
Strand 5
F
54 60anti-parallel
Strand 6
F
70 74anti-parallel
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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
80 81first strand
Strand 2
E
14 24anti-parallel
Strand 3
F
20 24anti-parallel
Strand 4
F
42 43anti-parallel
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There are 6 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
73 74first strand
Strand 2
E
54 59anti-parallel
Strand 3
F
91 96anti-parallel
Strand 4
F
45 47parallel
Strand 5
F
14 16anti-parallel
Strand 6
F
80 81anti-parallel
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There are 10 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
80 81first strand
Strand 2
G
14 24anti-parallel
Strand 3
H
41 43first strand
Strand 4
H
20 24anti-parallel
Strand 5
G
14 24anti-parallel
Strand 6
H
70 74first strand
Strand 7
H
54 60anti-parallel
Strand 8
G
91 96anti-parallel
Strand 9
G
42 47parallel
Strand 10
G
14 24anti-parallel
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There are 6 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
73 74first strand
Strand 2
G
54 59anti-parallel
Strand 3
H
91 96anti-parallel
Strand 4
H
45 47parallel
Strand 5
H
14 16anti-parallel
Strand 6
H
80 81anti-parallel
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