Analysis of interatomic Contacts of Structural Units in PDB entry:
2CMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CMG entry

There are 2 chains in PDB entry 2CMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 262
B
 MET 1SER 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2CMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 68Right-handed alpha
Helix 2
2
A
83 91Right-handed alpha
Helix 3
3
A
103 108Right-handed alpha
Helix 4
4
A
109 111Right-handed 310
Helix 5
5
A
116 122Right-handed alpha
Helix 6
6
A
131 135Right-handed 310
Helix 7
7
A
150 159Right-handed alpha
Helix 8
8
A
177 190Right-handed alpha
Helix 9
9
A
224 229Right-handed alpha
Helix 10
10
A
238 245Right-handed alpha
Helix 11
11
A
249 256Right-handed alpha
Helix 12
12
A
257 259Right-handed 310
Helix 13
13
B
55 68Right-handed alpha
Helix 14
14
B
83 91Right-handed alpha
Helix 15
15
B
103 110Right-handed alpha
Helix 16
16
B
116 123Right-handed alpha
Helix 17
17
B
131 135Right-handed 310
Helix 18
18
B
150 159Right-handed alpha
Helix 19
19
B
177 190Right-handed alpha
Helix 20
20
B
224 229Right-handed alpha
Helix 21
21
B
238 245Right-handed alpha
Helix 22
22
B
249 257Right-handed alpha
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There are 5 sheets in PDB entry 2CMG. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
11 16anti-parallel
Strand 3
B
11 16anti-parallel
Strand 4
B
2 8anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 25first strand
Strand 2
A
30 36anti-parallel
Strand 3
A
40 45anti-parallel
Strand 4
A
48 51anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 129first strand
Strand 2
A
96 100parallel
Strand 3
A
75 79parallel
Strand 4
A
140 145parallel
Strand 5
A
161 172parallel
Strand 6
A
208 214anti-parallel
Strand 7
A
194 198anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 25first strand
Strand 2
B
30 36anti-parallel
Strand 3
B
40 45anti-parallel
Strand 4
B
49 51anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 129first strand
Strand 2
B
96 100parallel
Strand 3
B
75 79parallel
Strand 4
B
140 145parallel
Strand 5
B
161 171parallel
Strand 6
B
209 214anti-parallel
Strand 7
B
194 198anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il