Analysis of interatomic Contacts of Structural Units in PDB entry:
2CMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CMU entry

There is 1 chain in PDB entry 2CMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLY 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2CMU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 29Right-handed 310
Helix 2
2
A
30 47Right-handed alpha
Helix 3
3
A
59 67Right-handed alpha
Helix 4
4
A
83 88Right-handed alpha
Helix 5
5
A
106 111Right-handed alpha
Helix 6
6
A
116 118Right-handed 310
Helix 7
7
A
119 127Right-handed alpha
Helix 8
8
A
142 144Right-handed 310
Helix 9
9
A
158 162Right-handed alpha
Helix 10
10
A
171 183Right-handed alpha
Helix 11
11
A
204 207Right-handed 310
Helix 12
12
A
229 242Right-handed alpha
Helix 13
13
A
293 303Right-handed alpha
Helix 14
14
A
316 321Right-handed 310
Helix 15
15
A
324 328Right-handed 310
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There are 5 sheets in PDB entry 2CMU. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
90 94anti-parallel
Strand 3
A
97 104anti-parallel
Strand 4
A
134 140parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
50 55parallel
Strand 3
A
15 19parallel
Strand 4
A
329 331anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
153 157anti-parallel
Strand 3
A
187 191parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 213first strand
Strand 2
A
216 221anti-parallel
Strand 3
A
252 257parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 280first strand
Strand 2
A
283 288anti-parallel
Strand 3
A
308 313parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il