Analysis of interatomic Contacts of Structural Units in PDB entry:
2CO7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CO7 entry

There are 2 chains in PDB entry 2CO7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 20PRO 144
B
 ALA 8LYS 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 3 helices in PDB entry 2CO7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
90 96Right-handed alpha
Helix 2
2
B
138 143Right-handed alpha
Helix 3
3
B
144 146Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 2CO7. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
73 75anti-parallel
Strand 3
A
86 89anti-parallel
Strand 4
A
116 121anti-parallel
Strand 5
A
43 50anti-parallel
Strand 6
A
24 29anti-parallel
Strand 7
B
10 13anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
106 112anti-parallel
Strand 3
A
56 62anti-parallel
Strand 4
A
133 142anti-parallel
Strand 5
B
116 131parallel
Strand 6
B
20 24parallel
Back to list of sheets
Back to top of page

There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
106 112anti-parallel
Strand 3
A
56 62anti-parallel
Strand 4
A
133 142anti-parallel
Strand 5
B
116 131parallel
Strand 6
B
91 100anti-parallel
Strand 7
B
42 50anti-parallel
Strand 8
B
65 68anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
30 35anti-parallel
Strand 3
B
73 80anti-parallel
Strand 4
B
59 62anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 151first strand
Strand 2
B
154 159anti-parallel
Strand 3
B
187 191anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 176first strand
Strand 2
B
167 172anti-parallel
Strand 3
B
201 205anti-parallel
Strand 4
B
216 218anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il