Analysis of interatomic Contacts of Structural Units in PDB entry:
2COJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2COJ entry

There are 2 chains in PDB entry 2COJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 22LEU 385
B
THR 24LEU 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2COJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
26 30Right-handed 310
Helix 2
2
A
85 90Right-handed alpha
Helix 3
3
A
112 128Right-handed alpha
Helix 4
4
A
133 148Right-handed alpha
Helix 5
5
A
149 152Right-handed 310
Helix 6
6
A
224 229Right-handed alpha
Helix 7
7
A
230 240Right-handed alpha
Helix 8
8
A
288 302Right-handed alpha
Helix 9
9
A
312 321Right-handed alpha
Helix 10
10
A
354 358Right-handed 310
Helix 11
11
A
359 374Right-handed alpha
Helix 12
12
B
26 30Right-handed 310
Helix 13
13
B
85 90Right-handed alpha
Helix 14
14
B
112 128Right-handed alpha
Helix 15
15
B
133 148Right-handed alpha
Helix 16
16
B
149 152Right-handed 310
Helix 17
17
B
223 227Right-handed 310
Helix 18
18
B
230 239Right-handed alpha
Helix 19
19
B
288 302Right-handed alpha
Helix 20
20
B
312 321Right-handed alpha
Helix 21
21
B
354 358Right-handed 310
Helix 22
22
B
359 374Right-handed alpha
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There are 9 sheets in PDB entry 2COJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
31 32first strand
Strand 2
A
72 75parallel
Strand 3
A
56 63anti-parallel
Strand 4
A
180 190anti-parallel
Strand 5
A
159 168anti-parallel
Strand 6
A
93 95anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
67 68first strand
Strand 2
A
56 63anti-parallel
Strand 3
A
180 190anti-parallel
Strand 4
A
159 168anti-parallel
Strand 5
A
98 102anti-parallel
Strand 6
A
108 111anti-parallel
Strand 7
A
382 384anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
79 81first strand
Strand 2
B
79 81anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
305 308first strand
Strand 2
A
274 278parallel
Strand 3
A
261 268anti-parallel
Strand 4
A
254 258anti-parallel
Strand 5
A
244 249anti-parallel
Strand 6
A
202 206parallel
Strand 7
A
336 345parallel
Strand 8
A
348 351anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
305 308first strand
Strand 2
A
274 278parallel
Strand 3
A
261 268anti-parallel
Strand 4
A
325 332anti-parallel
Strand 5
A
336 345anti-parallel
Strand 6
A
348 351anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
31 32first strand
Strand 2
B
72 75parallel
Strand 3
B
56 63anti-parallel
Strand 4
B
180 190anti-parallel
Strand 5
B
159 168anti-parallel
Strand 6
B
93 95anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
67 68first strand
Strand 2
B
56 63anti-parallel
Strand 3
B
180 190anti-parallel
Strand 4
B
159 168anti-parallel
Strand 5
B
98 102anti-parallel
Strand 6
B
108 111anti-parallel
Strand 7
B
382 384anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
305 308first strand
Strand 2
B
274 278parallel
Strand 3
B
261 268anti-parallel
Strand 4
B
254 258anti-parallel
Strand 5
B
244 249anti-parallel
Strand 6
B
202 205parallel
Strand 7
B
336 344parallel
Strand 8
B
349 351anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
305 308first strand
Strand 2
B
274 278parallel
Strand 3
B
261 268anti-parallel
Strand 4
B
325 332anti-parallel
Strand 5
B
336 344anti-parallel
Strand 6
B
349 351anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il