Analysis of interatomic Contacts of Structural Units in PDB entry:
2CSD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CSD entry

There are 2 chains in PDB entry 2CSD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3LEU 518
B
 LEU 3LEU 518
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 71 helices in PDB entry 2CSD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 41Right-handed alpha
Helix 2
2
A
45 48Right-handed 310
Helix 3
3
A
49 68Right-handed alpha
Helix 4
4
A
87 94Right-handed alpha
Helix 5
5
A
99 106Right-handed alpha
Helix 6
6
A
110 118Right-handed alpha
Helix 7
7
A
139 149Right-handed alpha
Helix 8
8
A
158 162Right-handed 310
Helix 9
9
A
163 167Right-handed 310
Helix 10
10
A
170 176Right-handed alpha
Helix 11
11
A
182 195Right-handed alpha
Helix 12
12
A
199 207Right-handed alpha
Helix 13
13
A
210 216Right-handed alpha
Helix 14
14
A
224 236Right-handed alpha
Helix 15
15
A
239 266Right-handed alpha
Helix 16
16
A
274 281Right-handed alpha
Helix 17
17
A
281 304Right-handed alpha
Helix 18
18
A
308 319Right-handed alpha
Helix 19
19
A
322 327Right-handed alpha
Helix 20
20
A
330 338Right-handed alpha
Helix 21
21
A
342 350Right-handed alpha
Helix 22
22
A
350 359Right-handed alpha
Helix 23
23
A
363 375Right-handed alpha
Helix 24
24
A
376 382Right-handed alpha
Helix 25
25
A
384 394Right-handed alpha
Helix 26
26
A
398 415Right-handed alpha
Helix 27
27
A
420 432Right-handed alpha
Helix 28
28
A
433 443Right-handed alpha
Helix 29
29
A
445 451Right-handed alpha
Helix 30
30
A
456 464Right-handed alpha
Helix 31
31
A
466 472Right-handed alpha
Helix 32
32
A
477 489Right-handed alpha
Helix 33
33
A
491 496Right-handed alpha
Helix 34
34
A
498 505Right-handed alpha
Helix 35
35
A
508 517Right-handed alpha
Helix 36
36
B
12 41Right-handed alpha
Helix 37
37
B
45 48Right-handed 310
Helix 38
38
B
49 68Right-handed alpha
Helix 39
39
B
87 94Right-handed alpha
Helix 40
40
B
99 106Right-handed alpha
Helix 41
41
B
110 118Right-handed alpha
Helix 42
42
B
139 149Right-handed alpha
Helix 43
43
B
158 162Right-handed 310
Helix 44
44
B
163 167Right-handed 310
Helix 45
45
B
170 176Right-handed alpha
Helix 46
46
B
182 195Right-handed alpha
Helix 47
47
B
199 207Right-handed alpha
Helix 48
48
B
210 216Right-handed alpha
Helix 49
49
B
224 236Right-handed alpha
Helix 50
50
B
239 266Right-handed alpha
Helix 51
51
B
274 281Right-handed alpha
Helix 52
52
B
281 304Right-handed alpha
Helix 53
53
B
308 319Right-handed alpha
Helix 54
54
B
322 327Right-handed alpha
Helix 55
55
B
330 338Right-handed alpha
Helix 56
56
B
342 350Right-handed alpha
Helix 57
57
B
350 358Right-handed alpha
Helix 58
58
B
363 375Right-handed alpha
Helix 59
59
B
376 383Right-handed alpha
Helix 60
60
B
384 394Right-handed alpha
Helix 61
61
B
398 416Right-handed alpha
Helix 62
62
B
422 432Right-handed alpha
Helix 63
63
B
433 444Right-handed alpha
Helix 64
64
B
445 450Right-handed alpha
Helix 65
65
B
456 462Right-handed alpha
Helix 66
66
B
466 472Right-handed alpha
Helix 67
67
B
478 480Right-handed 310
Helix 68
68
B
481 489Right-handed alpha
Helix 69
69
B
490 496Right-handed alpha
Helix 70
70
B
498 505Right-handed alpha
Helix 71
71
B
508 517Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2CSD. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
77 82anti-parallel
Strand 3
A
85 86anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
77 82anti-parallel
Strand 3
B
85 86anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il