Analysis of interatomic Contacts of Structural Units in PDB entry:
2CV6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CV6 entry

There is 1 chain in PDB entry 2CV6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7ALA 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2CV6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 14Right-handed 310
Helix 2
2
A
19 23Right-handed alpha
Helix 3
3
A
40 45Right-handed alpha
Helix 4
4
A
46 52Right-handed 310
Helix 5
5
A
153 158Right-handed 310
Helix 6
6
A
159 168Right-handed alpha
Helix 7
7
A
170 178Right-handed alpha
Helix 8
8
A
202 209Right-handed alpha
Helix 9
9
A
248 251Right-handed 310
Helix 10
10
A
252 259Right-handed alpha
Helix 11
11
A
367 372Right-handed 310
Helix 12
12
A
373 381Right-handed alpha
Helix 13
13
A
384 394Right-handed alpha
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There are 6 sheets in PDB entry 2CV6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
315 323parallel
Strand 3
A
291 299anti-parallel
Strand 4
A
336 339anti-parallel
Strand 5
A
272 278anti-parallel
Strand 6
A
358 360anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
315 323parallel
Strand 3
A
291 299anti-parallel
Strand 4
A
336 339anti-parallel
Strand 5
A
272 278anti-parallel
Strand 6
A
400 401anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
327 330anti-parallel
Strand 3
A
282 289anti-parallel
Strand 4
A
344 351anti-parallel
Strand 5
A
260 267anti-parallel
Strand 6
A
242 247anti-parallel
Strand 7
A
237 239anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 30first strand
Strand 2
A
33 38anti-parallel
Strand 3
A
55 61anti-parallel
Strand 4
A
125 133anti-parallel
Strand 5
A
74 82anti-parallel
Strand 6
A
104 108anti-parallel
Strand 7
A
228 229anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 100first strand
Strand 2
A
85 91anti-parallel
Strand 3
A
114 117anti-parallel
Strand 4
A
65 72anti-parallel
Strand 5
A
142 144anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 100first strand
Strand 2
A
85 91anti-parallel
Strand 3
A
114 117anti-parallel
Strand 4
A
65 72anti-parallel
Strand 5
A
198 200anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il