Analysis of interatomic Contacts of Structural Units in PDB entry:
2CV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CV8 entry

There are 2 chains in PDB entry 2CV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1MSE 180
B
 MSE 1MSE 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 2CV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 26Right-handed alpha
Helix 2
2
A
50 59Right-handed alpha
Helix 3
3
A
72 84Right-handed alpha
Helix 4
4
A
86 100Right-handed alpha
Helix 5
5
A
108 111Right-handed 310
Helix 6
6
A
141 145Right-handed alpha
Helix 7
7
B
14 26Right-handed alpha
Helix 8
8
B
38 42Right-handed 310
Helix 9
9
B
50 59Right-handed alpha
Helix 10
10
B
72 84Right-handed alpha
Helix 11
11
B
86 100Right-handed alpha
Helix 12
12
B
108 111Right-handed 310
Helix 13
13
B
141 152Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2CV8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
46 49anti-parallel
Strand 3
A
9 12anti-parallel
Strand 4
A
2 6anti-parallel
Strand 5
A
63 66parallel
Strand 6
A
69 71anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
114 117anti-parallel
Strand 3
A
128 134anti-parallel
Strand 4
A
157 163parallel
Strand 5
A
170 178anti-parallel
Strand 6
B
170 178anti-parallel
Strand 7
B
157 163anti-parallel
Strand 8
B
128 134parallel
Strand 9
B
114 117anti-parallel
Strand 10
B
103 106anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
B
138 140anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
46 49anti-parallel
Strand 3
B
9 12anti-parallel
Strand 4
B
2 6anti-parallel
Strand 5
B
63 66parallel
Strand 6
B
69 71anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il