Analysis of interatomic Contacts of Structural Units in PDB entry:
2CVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CVC entry

There is 1 chain in PDB entry 2CVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 40LYS 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 2CVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 55Right-handed 310
Helix 2
2
A
66 76Right-handed alpha
Helix 3
3
A
79 83Right-handed 310
Helix 4
4
A
102 124Right-handed alpha
Helix 5
5
A
134 139Right-handed alpha
Helix 6
6
A
155 164Right-handed alpha
Helix 7
7
A
177 181Right-handed 310
Helix 8
8
A
201 205Right-handed 310
Helix 9
9
A
216 235Right-handed alpha
Helix 10
10
A
243 249Right-handed alpha
Helix 11
11
A
249 254Right-handed alpha
Helix 12
12
A
298 305Right-handed alpha
Helix 13
13
A
328 332Right-handed 310
Helix 14
14
A
335 342Right-handed alpha
Helix 15
15
A
348 357Right-handed alpha
Helix 16
16
A
359 367Right-handed alpha
Helix 17
17
A
374 379Right-handed alpha
Helix 18
18
A
389 394Right-handed alpha
Helix 19
19
A
402 417Right-handed alpha
Helix 20
20
A
425 429Right-handed 310
Helix 21
21
A
448 461Right-handed alpha
Helix 22
22
A
463 470Right-handed alpha
Helix 23
23
A
475 480Right-handed 310
Helix 24
24
A
492 496Right-handed 310
Helix 25
25
A
510 527Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2CVC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
146 147parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
62 65anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
90 91anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
191 193anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
294 297anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 435first strand
Strand 2
A
445 447anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il