Analysis of interatomic Contacts of Structural Units in PDB entry:
2CVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CVF entry

There are 2 chains in PDB entry 2CVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 220
B
 MET 1GLU 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2CVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 14Right-handed alpha
Helix 2
2
A
32 43Right-handed alpha
Helix 3
3
A
60 69Right-handed alpha
Helix 4
4
A
75 78Right-handed 310
Helix 5
5
A
90 101Right-handed alpha
Helix 6
6
A
124 131Right-handed alpha
Helix 7
7
A
133 145Right-handed alpha
Helix 8
8
A
168 170Right-handed 310
Helix 9
9
A
171 176Right-handed alpha
Helix 10
10
B
6 14Right-handed alpha
Helix 11
11
B
31 44Right-handed alpha
Helix 12
12
B
61 70Right-handed alpha
Helix 13
13
B
72 79Right-handed alpha
Helix 14
14
B
88 99Right-handed alpha
Helix 15
15
B
126 145Right-handed alpha
Helix 16
16
B
171 176Right-handed alpha
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There are 6 sheets in PDB entry 2CVF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
150 154parallel
Strand 3
A
109 111parallel
Strand 4
A
48 51parallel
Strand 5
A
80 83parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
191 194anti-parallel
Strand 3
A
206 208anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 212first strand
Strand 2
A
215 217anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 83first strand
Strand 2
B
47 51parallel
Strand 3
B
106 111parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 157first strand
Strand 2
B
165 166anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 184first strand
Strand 2
B
191 195anti-parallel
Strand 3
B
206 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il