Analysis of interatomic Contacts of Structural Units in PDB entry:
2CVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CVH entry

There are 2 chains in PDB entry 2CVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 220
B
 MET 1GLU 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2CVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 13Right-handed alpha
Helix 2
2
A
32 45Right-handed alpha
Helix 3
3
A
58 68Right-handed alpha
Helix 4
4
A
72 79Right-handed alpha
Helix 5
5
A
89 102Right-handed alpha
Helix 6
6
A
119 124Right-handed 310
Helix 7
7
A
125 126Right-handed 310
Helix 8
8
A
127 146Right-handed alpha
Helix 9
9
A
169 175Right-handed alpha
Helix 10
10
B
6 13Right-handed alpha
Helix 11
11
B
32 45Right-handed alpha
Helix 12
12
B
58 69Right-handed alpha
Helix 13
13
B
72 79Right-handed alpha
Helix 14
14
B
88 102Right-handed alpha
Helix 15
15
B
124 146Right-handed alpha
Helix 16
16
B
171 176Right-handed alpha
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There are 2 sheets in PDB entry 2CVH. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
47 52parallel
Strand 3
A
106 112parallel
Strand 4
A
149 153parallel
Strand 5
A
22 26parallel
Strand 6
A
178 184parallel
Strand 7
A
190 197anti-parallel
Strand 8
A
206 212anti-parallel
Strand 9
A
215 218anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 83first strand
Strand 2
B
47 52parallel
Strand 3
B
106 112parallel
Strand 4
B
149 153parallel
Strand 5
B
22 26parallel
Strand 6
B
178 184parallel
Strand 7
B
190 197anti-parallel
Strand 8
B
206 212anti-parallel
Strand 9
B
215 218anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il